Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120326.Seq
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568...    29   3.1  
01_06_1190 + 35248783-35248835,35249218-35249550,35251288-352515...    29   5.4  
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     28   7.1  
05_02_0055 + 6185448-6185473,6186336-6186678,6187374-6187523,618...    28   7.1  
06_01_0096 - 794148-794246,795682-796975,798960-799417                 28   9.4  
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906...    28   9.4  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     28   9.4  
01_01_0155 - 1362710-1363267                                           28   9.4  

>01_06_1696 +
           39256171-39256393,39256513-39256595,39256692-39256831,
           39256882-39257398,39257518-39257565,39257832-39258006,
           39258122-39258234,39258329-39258425,39258579-39258798,
           39258985-39259144,39259233-39259646
          Length = 729

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 324 HVGCRRRIVICLQVLHNGPKLGHCLMNSSRKNIEKMFFTLCML 196
           ++GC  RI++     H  P  G   MN+  ++   + + LC+L
Sbjct: 372 YIGCDNRIILVGDAAHRFPPAGGFGMNTGVQDAHNLAWKLCLL 414


>01_06_1190 +
           35248783-35248835,35249218-35249550,35251288-35251588,
           35251680-35252120
          Length = 375

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 324 HVGCRRRIVICLQVLHNGPKLGHCLMNSSRKNIEKMFFTLCMLSVL 187
           H GC+R+++  +  LHNG  +   + ++    +    +TL  + VL
Sbjct: 18  HCGCKRKLIPIILYLHNGRLVIGSVEDALEHELANRLYTLARVLVL 63


>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 293 HITIRRRHPTWTRSCVSRASPQT 361
           +I  RRRH T+T SC  R SP +
Sbjct: 21  YIPPRRRHGTFTSSCAFRLSPSS 43


>05_02_0055 +
           6185448-6185473,6186336-6186678,6187374-6187523,
           6187640-6187906,6189187-6189276,6189802-6190136,
           6190777-6190864
          Length = 432

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 411 HPRRGLAKWLGHFFKTHVWHASHVV 485
           HPR  + KW G  F++H+W +  VV
Sbjct: 3   HPR--VTKWYGKVFRSHLWGSPAVV 25


>06_01_0096 - 794148-794246,795682-796975,798960-799417
          Length = 616

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 441 GHFFKTHVWHASHVVRVA 494
           G +FK+H W A+H++ +A
Sbjct: 447 GFYFKSHRWRAAHIIVIA 464


>01_06_0939 -
           33188620-33189252,33189570-33189680,33190460-33190668,
           33190781-33191078
          Length = 416

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -3

Query: 728 RWRNRCMRVQNTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRIRFVANQVIEKLHKYL 549
           RW  RC R +  + AL+  LA  D     + D  + H +        VA Q++  +  + 
Sbjct: 120 RWELRCKRARAAKKALLDALA-GDTVDVLYLDNTYCHPSLSFPPRPIVAEQIVNIIRAHP 178

Query: 548 CNQIV 534
            ++I+
Sbjct: 179 DHEII 183


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
 Frame = -1

Query: 676  SSWRNPMVAFLHSLT------NGTHMS--RFVYKEYALSQIKL*KNCTNICVIKLFSLIT 521
            S W N +V F H+ +      NG  M+   F+ +   + Q  + +   ++C+I  FS + 
Sbjct: 5029 SIWVNTVVTFTHANSIPPDNSNGDPMTYETFIAQRSHIVQQSIQQATGDMCLINAFSFVE 5088

Query: 520  SLSFCNRSEATRTT*EACQTW 458
            +  +C R+   +      Q W
Sbjct: 5089 NYLYCKRNCQGKKVLPTIQNW 5109


>01_01_0155 - 1362710-1363267
          Length = 185

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 412 CSARTPSICICTRNIEFCLRAC 347
           CS   P IC C   +E C  AC
Sbjct: 126 CSRSLPPICRCADEVESCAAAC 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,710,826
Number of Sequences: 37544
Number of extensions: 438792
Number of successful extensions: 1263
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)