Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120326.Seq
(769 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28914| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9) 31 1.0
SB_44635| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 29 4.1
SB_44454| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013) 29 5.5
SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013) 29 5.5
SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_53890| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 9.5
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015) 28 9.5
SB_13659| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00051) 28 9.5
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0) 28 9.5
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.5
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_28914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 32.3 bits (70), Expect = 0.44
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -3
Query: 719 NRCMRVQNTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRIR-FVANQVIEKLHKYLCN 543
N C V H L Q++ C++ HVA VQ + NQV H N
Sbjct: 667 NECYYVNQVTHGAH--LVQANECYYV---NQVTHVAHLVQANECYYVNQVTHVAHLVQAN 721
Query: 542 QIVFVNNVTFVL*SVRSN 489
+ +VN VT V V++N
Sbjct: 722 ECYYVNQVTHVAHLVQAN 739
Score = 31.9 bits (69), Expect = 0.59
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -3
Query: 719 NRCMRVQNTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRIR-FVANQVIEKLHKYLCN 543
N C V H V L Q + C++ HVA VQ + NQV H N
Sbjct: 307 NECYYVNQVTH--VAHLVQVNECYYV---NQVTHVAHLVQVNECYYVNQVTHVAHLVQAN 361
Query: 542 QIVFVNNVTFVL*SVRSN 489
+ +VN VT V V++N
Sbjct: 362 ECYYVNQVTHVAHLVQAN 379
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -3
Query: 719 NRCMRVQNTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRIR-FVANQVIEKLHKYLCN 543
N C V H V L Q++ C++ HVA VQ + NQV H N
Sbjct: 685 NECYYVNQVTH--VAHLVQANECYYV---NQVTHVAHLVQANECYYVNQVTHVAHLVQAN 739
Query: 542 QIVFVNNVTFVL*SVRSN 489
+ +VN VT V++N
Sbjct: 740 ECYYVNQVTHDAPIVQAN 757
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -3
Query: 719 NRCMRVQNTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRIR-FVANQVIEKLHKYLCN 543
N C V H V L Q++ C++ H A VQ + NQV H N
Sbjct: 649 NECYCVNQVTH--VAHLVQANECYYV---NQVTHGAHLVQANECYYVNQVTHVAHLVQAN 703
Query: 542 QIVFVNNVTFVL*SVRSN 489
+ +VN VT V V++N
Sbjct: 704 ECYYVNQVTHVAHLVQAN 721
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -3
Query: 719 NRCMRVQNTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRIR-FVANQVIEKLHKYLCN 543
N C V H V L Q + C++ HVA VQ + NQV H N
Sbjct: 325 NECYYVNQVTH--VAHLVQVNECYYV---NQVTHVAHLVQANECYYVNQVTHVAHLVQAN 379
Query: 542 QIVFVNNVTFVL*SVRSN 489
+ +VN VT V++N
Sbjct: 380 ECYYVNQVTHDAPLVQAN 397
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = -3
Query: 719 NRCMRVQNTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRIR-FVANQVIEKLHKYLCN 543
N C V H I+ Q++ C++ HVA VQ + NQV H N
Sbjct: 415 NECYYVNQVTHGAPIV--QANECYYV---NQVTHVAHLVQANECYYVNQVTHVAHLVQVN 469
Query: 542 QIVFVNNVT 516
+ +VN VT
Sbjct: 470 ECYYVNQVT 478
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -3
Query: 719 NRCMRVQNTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRIR-FVANQVIEKLHKYLCN 543
N C V H I+ Q + C++ HVA VQ + NQV H N
Sbjct: 541 NECYYVNQVTHDAPIV--QVNECYYV---NQVPHVAHLVQANECYYVNQVTHVAHLVQGN 595
Query: 542 QIVFVNNVTFVL*SVRSN 489
+ +VN VT+ V++N
Sbjct: 596 KCYYVNQVTYGAPLVQAN 613
>SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9)
Length = 748
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -3
Query: 719 NRCMRVQNTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRIR-FVANQVIEKLHKYLCN 543
N C V H V L Q++ C+F +H A VQ + NQV H N
Sbjct: 569 NECYYVNQVTH--VAPLVQANECYFV---NQVSHGAPLVQANEWYFVNQVTHVAHLVQVN 623
Query: 542 QIVFVNNVTFVL*SVRSNTY 483
+ +VN VT+ V++N +
Sbjct: 624 ECYYVNQVTYGAPKVQANEW 643
>SB_44635| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 342
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -3
Query: 719 NRCMRVQNTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRIR-FVANQVIEKLHKYLCN 543
N C V + L Q++ C++ HVA VQ + NQV H N
Sbjct: 119 NECYYVNQVTYGAP--LVQANECYYV---NQVTHVAHLVQANEWYYVNQVTHVAHLVQAN 173
Query: 542 QIVFVNNVTFVL*SVRSN 489
+ +VN VT V V+ N
Sbjct: 174 ECYYVNQVTHVAHLVQVN 191
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = -3
Query: 719 NRCMRVQNTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRIR-FVANQVIEKLHKYLCN 543
N C V H V L Q++ C++ HVA VQ + NQV N
Sbjct: 83 NECYYVNQVPH--VAHLVQANECYYV---NQVTHVAHLVQVNECYYVNQVTYGAPLVQAN 137
Query: 542 QIVFVNNVTFVL*SVRSNTY 483
+ +VN VT V V++N +
Sbjct: 138 ECYYVNQVTHVAHLVQANEW 157
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -3
Query: 719 NRCMRVQNTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRIR-FVANQVIEKLHKYLCN 543
N C V H I+ Q + C++ HVA VQ + NQV H N
Sbjct: 263 NECYYVNQVTHDAPIV--QVNECYYV---NQVPHVAHLVQANECYYVNQVTHVAHLVQGN 317
Query: 542 QIVFVNNVTFVL*SVRSN 489
+ +VN VT+ V++N
Sbjct: 318 KCYYVNQVTYGAPLVQAN 335
>SB_44454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 599 FVHKTRHVRAICQRMQKSNHRI 664
FVH T HVRA+ QR++ R+
Sbjct: 689 FVHDTFHVRALSQRLRDGQRRV 710
>SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
Length = 808
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +2
Query: 551 DICAIFL*LDLRQSVFFVHKTRHVRAICQRMQKSNHRIAPRGSRARVEYFERACNGFSTA 730
+IC +L + S F HVRA+ +R+++ ++ PR + R+ E C G
Sbjct: 194 EICVPYLDDVIVFSKTFQEHLDHVRAVLRRLREHGVKLKPR--KCRLFQHEVTCLGRVVT 251
Query: 731 ANGNRLLLPFKT 766
+ G+R PF T
Sbjct: 252 SEGHR-SDPFNT 262
>SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
Length = 994
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +2
Query: 551 DICAIFL*LDLRQSVFFVHKTRHVRAICQRMQKSNHRIAPRGSRARVEYFERACNGFSTA 730
+IC +L + S F HVRA+ +R+++ ++ PR + R+ E C G
Sbjct: 751 EICVPYLDDVIVFSKTFQEHLDHVRAVLRRLREHGVKLKPR--KCRLFQHEVTCLGRVVT 808
Query: 731 ANGNRLLLPFKT 766
+ G+R PF T
Sbjct: 809 SEGHR-SDPFNT 819
>SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1059
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 587 VANQVIEKLHKYLCNQIVFVNNVT 516
VANQV H L NQ+ VN+VT
Sbjct: 807 VANQVTHSNHVTLANQVTHVNHVT 830
>SB_53890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 621 TCRVLCTKNTLCRKSSYRK 565
TC LCT+NT CR ++ K
Sbjct: 54 TCAHLCTRNTECRSINFEK 72
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 656 GCFFAFFDKWHAHVAFCVQRIRFVANQVIEKLHK 555
G F ++HV C Q+ ANQVIE +H+
Sbjct: 378 GLVFKTTKSRNSHVKKCAQKNNIPANQVIEIMHR 411
>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 668 PRGSRARVEYFERACNGFSTAANGNRLLL 754
PR R V+YF++ NG+ A G LLL
Sbjct: 607 PRSYRFIVKYFDKTENGYVEAGKGEVLLL 635
>SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)
Length = 504
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 621 TCRVLCTKNTLCRKSSYRK 565
TC LCT+NT CR ++ K
Sbjct: 40 TCAHLCTRNTECRSINFEK 58
>SB_13659| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00051)
Length = 1024
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 599 FVHKTRHVRAICQRMQKSNHRIAP 670
FVH T HVRA+ QR + R P
Sbjct: 984 FVHDTFHVRALSQRRLRDGQRRVP 1007
>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1457
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 176 NQANNTDNIHNVKNIFSI 229
N NNTDNI+N+ NI +I
Sbjct: 1375 NNINNTDNINNIDNIDNI 1392
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Frame = +2
Query: 98 LIVDGKGLTFFTEFNKCIVSIKSSFENQANNTDNIH-----------NVKNIFSIFLRDE 244
++ D F T NK VS ++ + ++ NT NI NV N FSI +RD
Sbjct: 733 VLTDDAAGRFVTRANKLYVSRSANLDYESKNTYNITIRSTDTGNPSLNVSNTFSILVRD- 791
Query: 245 FIKQCPNLGPLCNT 286
+ + P+ L N+
Sbjct: 792 -VNEAPSKVSLSNS 804
>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 656 GCFFAFFDKWHAHVAFCVQRIRFVANQVIEKLHK 555
G F ++HV C Q+ ANQVIE +H+
Sbjct: 378 GLVFKTTKSRNSHVKKCAQKNNIPANQVIEIMHR 411
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,171,856
Number of Sequences: 59808
Number of extensions: 555977
Number of successful extensions: 1661
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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