Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120326.Seq
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-10|AAA50733.2|  382|Caenorhabditis elegans Hypothetical p...    31   0.68 
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    29   3.6  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    29   3.6  
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z92796-4|CAB63231.1|  516|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z82051-8|CAB04814.1|  349|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF077541-4|AAM19065.1|  625|Caenorhabditis elegans Alpha-catulin...    28   8.4  
AF077541-3|AAM54172.1|  750|Caenorhabditis elegans Alpha-catulin...    28   8.4  
AF077541-2|AAL77190.1|  759|Caenorhabditis elegans Alpha-catulin...    28   8.4  
AF077541-1|AAL77189.1|  803|Caenorhabditis elegans Alpha-catulin...    28   8.4  

>U00065-10|AAA50733.2|  382|Caenorhabditis elegans Hypothetical
           protein D1044.1 protein.
          Length = 382

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 20/96 (20%), Positives = 42/96 (43%)
 Frame = +3

Query: 378 VQMQILGVLAEHPRRGLAKWLGHFFKTHVWHASHVVRVASDRLQNESDVINENNLITQIF 557
           +++  LG+  E+ R    ++L H++ T   H S      S   ++     N  N  +   
Sbjct: 283 IRILCLGLSVENRRANTQRYLNHYYTTFKSHFSTAPFTFSQLEESYRTHFNFVNATSLFS 342

Query: 558 VQFFYNLICDKAYSLYTKRDMCVPFVKECKKATIGL 665
           + ++Y +  D++  L +  D      +E  + TIG+
Sbjct: 343 LSYYYKMYKDESLDLKSGADEREHKAQEILRRTIGI 378


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -1

Query: 550 CVIKLFSLITSLSFCNRSEATRTT*EACQTWVLKKCPNHFASPRRGCSARTPSICICTRN 371
           CVI LF++  +++  +    TR     C   V   C    AS +  CS +  + C C  +
Sbjct: 3   CVIILFAVALAVAQASSIRETRQASCGCAQSVQPTCSCQQASQQYSCSCQPSTPCSCASS 62

Query: 370 IEFCLR 353
            ++ L+
Sbjct: 63  QQYQLQ 68


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 584 ANQVIEKLHKYLCNQIVFVNNVTFVL*SVRSNTYNMRGMPN--MGLKKMSQPFCKPS 420
           A Q  EK  K   N+  F+ N TF+     S TYN R +    +GL   S  +C PS
Sbjct: 619 ARQKQEKERKKQANKCTFLQNFTFIRHQHPSQTYNERVLDGKVVGL-YFSAHWCPPS 674


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = -3

Query: 647 FAFFDKWHAHVAFCVQRIRFVANQVIEKLHKYLCNQIVFVNNVTFVL*SVRSNTYNMRGM 468
           F  F  +H  +  C     F+    IEKL   L   +  ++ VTFV   V++     R  
Sbjct: 384 FTSFANFHTRLYTCSAEFDFIQYSTIEKLCGTLLIPLALISLVTFVFNFVKNTNLLWRNS 443

Query: 467 PNMG 456
             +G
Sbjct: 444 EEIG 447


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 423 LVEGAQRGRQVSAFALETLNFVCGLARLTHD 331
           +  G Q G+  SA   ET++FVC L    +D
Sbjct: 157 MTNGTQAGKWASASCTETMSFVCELPATIYD 187


>Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical
           protein T01B4.2c protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = +3

Query: 447 FFKTHVWHASHVVRVASDRLQ-NESDVINENNLITQ------IFVQFFYNLICDKAYSLY 605
           F ++ +  AS +  VASD +   ES +  +   IT       +F+ FF+ ++C    S +
Sbjct: 277 FRRSKLKRASTIESVASDEMPCEESGISEDEEQITTFPVKWALFIVFFFMVVCSLIVSFW 336

Query: 606 TKRDMCVPF 632
            K D    F
Sbjct: 337 EKWDFLTAF 345


>Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical
           protein T01B4.2b protein.
          Length = 733

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = +3

Query: 447 FFKTHVWHASHVVRVASDRLQ-NESDVINENNLITQ------IFVQFFYNLICDKAYSLY 605
           F ++ +  AS +  VASD +   ES +  +   IT       +F+ FF+ ++C    S +
Sbjct: 298 FRRSKLKRASTIESVASDEMPCEESGISEDEEQITTFPVKWALFIVFFFMVVCSLIVSFW 357

Query: 606 TKRDMCVPF 632
            K D    F
Sbjct: 358 EKWDFLTAF 366


>Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical
           protein T01B4.2a protein.
          Length = 757

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = +3

Query: 447 FFKTHVWHASHVVRVASDRLQ-NESDVINENNLITQ------IFVQFFYNLICDKAYSLY 605
           F ++ +  AS +  VASD +   ES +  +   IT       +F+ FF+ ++C    S +
Sbjct: 322 FRRSKLKRASTIESVASDEMPCEESGISEDEEQITTFPVKWALFIVFFFMVVCSLIVSFW 381

Query: 606 TKRDMCVPF 632
            K D    F
Sbjct: 382 EKWDFLTAF 390


>Z92796-4|CAB63231.1|  516|Caenorhabditis elegans Hypothetical
           protein H25K10.5 protein.
          Length = 516

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 568 KNCTNICVIKLFSLITSLS 512
           KNCTNIC I +F+  T LS
Sbjct: 74  KNCTNICGILVFNSKTDLS 92


>Z82051-8|CAB04814.1|  349|Caenorhabditis elegans Hypothetical
           protein T23D5.11 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = -2

Query: 303 IVICLQVLHNGPKLGHCLMNSSRKNIEKMFFTLCMLSV 190
           I+IC Q+++ G ++   L+++  + + K FF   ++ +
Sbjct: 204 ILICGQIMYEGMRIKLSLLSAQSRRLHKQFFRALVIQI 241


>AF077541-4|AAM19065.1|  625|Caenorhabditis elegans Alpha-catulin
           (catenin/vinculinrelated) protein 1, isoform c protein.
          Length = 625

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 585 DKAYSLYTKRDMCVPFVKECKKATIGLRQEDHERVLSILNAHATV 719
           D AY+ + +R+  + F++EC+     L Q D    L+      TV
Sbjct: 333 DSAYTPHHQREQILDFLEECRFEMTNLIQPDENEQLAASGLEVTV 377


>AF077541-3|AAM54172.1|  750|Caenorhabditis elegans Alpha-catulin
           (catenin/vinculinrelated) protein 1, isoform d protein.
          Length = 750

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 585 DKAYSLYTKRDMCVPFVKECKKATIGLRQEDHERVLSILNAHATV 719
           D AY+ + +R+  + F++EC+     L Q D    L+      TV
Sbjct: 333 DSAYTPHHQREQILDFLEECRFEMTNLIQPDENEQLAASGLEVTV 377


>AF077541-2|AAL77190.1|  759|Caenorhabditis elegans Alpha-catulin
           (catenin/vinculinrelated) protein 1, isoform b protein.
          Length = 759

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 585 DKAYSLYTKRDMCVPFVKECKKATIGLRQEDHERVLSILNAHATV 719
           D AY+ + +R+  + F++EC+     L Q D    L+      TV
Sbjct: 333 DSAYTPHHQREQILDFLEECRFEMTNLIQPDENEQLAASGLEVTV 377


>AF077541-1|AAL77189.1|  803|Caenorhabditis elegans Alpha-catulin
           (catenin/vinculinrelated) protein 1, isoform a protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 585 DKAYSLYTKRDMCVPFVKECKKATIGLRQEDHERVLSILNAHATV 719
           D AY+ + +R+  + F++EC+     L Q D    L+      TV
Sbjct: 333 DSAYTPHHQREQILDFLEECRFEMTNLIQPDENEQLAASGLEVTV 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,828,469
Number of Sequences: 27780
Number of extensions: 428195
Number of successful extensions: 1471
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)