Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120326.Seq
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   7.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.5  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   9.5  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   9.5  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   9.5  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   9.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 400 SSLSTLDEGLQNGWDIFLRPMFGMP 474
           S++S L + L  G+D  +RP FG P
Sbjct: 4   SNISELLDNLLRGYDNSVRPDFGGP 28


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 291 NILQSDAGTRRGRDHVSVVQARKQN 365
           +I+Q+D  TR   D V  ++A K+N
Sbjct: 333 DIIQNDRRTRHLSDRVVALEAEKKN 357


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 385 CRYLASSLSTLDEGLQN 435
           C+ +ASS+S  +EGL N
Sbjct: 595 CKVIASSVSAGEEGLGN 611


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 260 PNLGPLCNTCKHI 298
           P+  P+CN CK +
Sbjct: 29  PSKEPICNICKRV 41


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 489 VASDRLQNESDVINENNLITQIFVQFFYNLICDKAYSLYTK 611
           +A D L    D  N+NNLI      +  ++     Y LY K
Sbjct: 386 LARDILGYNFDFQNKNNLIPSALQSYSTSMRDPAFYMLYQK 426


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +1

Query: 433 NGWDIFLRPMF-GMPLML 483
           +G+DI LRP F G PL++
Sbjct: 46  DGYDIRLRPNFGGEPLLV 63


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 403 SLSTLDEGLQNGWDIFLRPMF 465
           S    DEG    W+  LRP F
Sbjct: 16  SFEDSDEGSNWNWNTLLRPNF 36


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 403 SLSTLDEGLQNGWDIFLRPMF 465
           S    DEG    W+  LRP F
Sbjct: 60  SFEDSDEGSNWNWNTLLRPNF 80


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 403 SLSTLDEGLQNGWDIFLRPMF 465
           S    DEG    W+  LRP F
Sbjct: 60  SFEDSDEGSNWNWNTLLRPNF 80


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 403 SLSTLDEGLQNGWDIFLRPMF 465
           S    DEG    W+  LRP F
Sbjct: 60  SFEDSDEGSNWNWNTLLRPNF 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,040
Number of Sequences: 438
Number of extensions: 4555
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)