Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120326.Seq
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05570.1 68418.m00605 transducin family protein / WD-40 repea...    30   2.0  
At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein c...    29   2.6  
At4g37440.1 68417.m05299 expressed protein                             29   4.5  
At3g23070.1 68416.m02908 expressed protein contains Pfam domain,...    29   4.5  
At3g04800.1 68416.m00518 mitochondrial import inner membrane tra...    28   6.0  
At2g40250.1 68415.m04950 GDSL-motif lipase/hydrolase family prot...    28   7.9  

>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
           family protein similar to unknown protein (pir||T04661);
           contains Pfam PF00400: WD domain, G-beta repeat (4
           copies, 2 weak)|8683726|gb|AV524198.1|AV524198
          Length = 1124

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 474 SHVVRVA-SDRLQNESDVINENNLITQIFVQFFYNLICDKAYSLYTKRDM 620
           SH+++ + S     E + + E  LI QIF    + +  + A  LYT + +
Sbjct: 770 SHIIKASESHSPDGEQNAVTETKLIDQIFANSLFLMCSEDALRLYTVKSL 819


>At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein
           contains Pfam domain PF02891: MIZ zinc finger
          Length = 703

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 248 IKQCPNLGPLCNTCKHITIRRRHPTW-TRSCVSRASPQTKFNVSSANADTWRPR 406
           + Q  N G    T  H +  R+HP+  T   VSR S     +++  +   WRPR
Sbjct: 567 LSQPNNYGVRGLTSSHASTSRQHPSGPTVQSVSRLSDLVDVDLTVPDTSNWRPR 620


>At4g37440.1 68417.m05299 expressed protein
          Length = 471

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 768 KVLNGSNSLFPLAAVEKPLHARSKY-STRARDPLGAIR 658
           KVL+ + S+FPLA    PL A   Y S+  + PL AI+
Sbjct: 303 KVLSENPSIFPLANTVNPLGAADVYTSSEQQKPLLAIK 340


>At3g23070.1 68416.m02908 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 881

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 59  SLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANN 190
           S CF F +Y +   +   KG+TF +  N  I S + SF    NN
Sbjct: 25  SFCFRFLRYSSSISLGSCKGVTFSSR-NDQIASRRFSFSRDCNN 67


>At3g04800.1 68416.m00518 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           contains Pfam PF02466: Mitochondrial import inner
           membrane translocase subunit Tim17
          Length = 188

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 2   YDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFE 175
           Y+ ++ V    + L +   S  FLF +   +  +  G+ LTFFT +  C  S+  +F+
Sbjct: 20  YNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGSVLGAFK 77


>At2g40250.1 68415.m04950 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 361

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 479 MRGMPNMGLKKMSQPFCKPSSRVLSEDAKYLHLHSKH 369
           +RG    GL +   P C+P SR   + +KYL   S H
Sbjct: 305 LRGCCGTGLLEAG-PLCQPLSRTCDDVSKYLFFDSVH 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,067,518
Number of Sequences: 28952
Number of extensions: 365031
Number of successful extensions: 1161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)