Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120325.Seq
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 32 0.10
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 30 0.31
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 28 1.7
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 28 1.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 2.2
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 26 5.1
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 26 5.1
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 26 5.1
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 26 6.7
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 26 6.7
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 6.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 6.7
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 26 6.7
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 26 6.7
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 25 8.9
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 31.9 bits (69), Expect = 0.10
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 541 TPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAR-NEAISSPALVWLSTVTKS 717
+PP S K QE + P + T L+++ S+ + NE ++SP +++T S
Sbjct: 122 SPPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAASLTSS 181
Query: 718 CLQDFKLSP 744
L+DF+ SP
Sbjct: 182 PLKDFQSSP 190
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 30.3 bits (65), Expect = 0.31
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 150 SSLFKNSESSQNGISVPLLMYCCGCNICI-FSPRSINNSSRVVRLSRC 10
S +++SE S+N S L+Y C +C+ F +N V L+ C
Sbjct: 570 SDQYEDSEDSRNFPSKLYLVYLSNCPLCLKFKLSKVNQQKATVHLATC 617
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 562 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 648
++QK +P DK P N L+L A TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 444 RRRRSSTGATYGLTRRRRSSAGSHADAEARVTDAARV 554
+RRRS++G + LTR S G D R +D AR+
Sbjct: 483 KRRRSNSGV-HSLTRSDSSFNGFERDTRRRSSDIARI 518
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 101 GTEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANTM 208
GT I E N L ID PLSR Y+NA T+
Sbjct: 1198 GTMIAAETFDELENNLALAIDRLPLSRNYFNAGLTL 1233
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 104 TEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANT 205
TE+ FC DS++ R L + YPL Y + T
Sbjct: 388 TELFFCSDSKYYVRHLVNQQVYPLIDCGYGPSGT 421
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 259 EDYNNIFKVMENIRKHSNKNLNDQD 333
ED N+ K ++RKH +N D+D
Sbjct: 86 EDLYNLIKKAVSVRKHLERNRKDKD 110
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 329 WSFKFLLLCFLIFSITLNMLL*SSM*TCNWTRHSFPWSCKT 207
+S+ L+ + FS TL +L + CN T +F WSC++
Sbjct: 414 YSYVLLIAGGVGFSYTLPILRDLILKECNVTSITFIWSCRS 454
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 104 TEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANT 205
TE+ C+DS++ R L + + +PLS + +NT
Sbjct: 378 TELFQCEDSKYYVRHLVNEEVFPLSDCGFGPSNT 411
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 415 LCSCSFYLINIFYALHSTIELPNICLTRLGRLNFCCCVS*YFPS 284
L +CS I++ Y L+ LP I + LNF ++ YF S
Sbjct: 120 LSTCSPLWISVIYLLNPLTFLPGIACSADMILNFTTLMTIYFAS 163
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 250 LAIGHGIVFHGRVKHGIGRIVIHPTERVRIYVFEQPVQKL 131
L +GH FHG V GRI++ T Y E+ V ++
Sbjct: 273 LVMGHTPQFHGIVSRCEGRILLIDTGLCSAYAGERAVLRI 312
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = -3
Query: 150 SSLFKNSESS----QNGISV-PLLMYCCGCNICIFSPRSINN 40
SS F+ ES+ Q I+V PLL+ C CN FS RS+ +
Sbjct: 1230 SSAFQRYESTLTDDQCFINVSPLLLKCPSCNATSFSLRSVKS 1271
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 250 VHIEDYNNIFKVMENIRKHSNKNLNDQDELNIYLGV 357
+H N F E + K+S L++ DE+ I LGV
Sbjct: 101 LHDHSSNGTFLNFERLAKNSRTILSNGDEIRIGLGV 136
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 716 DFVTVESQTRAGDEIASFLATVGCVECLAVNSSVFCNFG 600
D ++ES A E+ V V+ L VNS+VF +FG
Sbjct: 62 DVSSLESANEAAQEVTK---VVDAVDVLWVNSAVFHSFG 97
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -1
Query: 290 SITLNMLL*SSM*TCNWTRHSFPWS 216
S+ N+ + + +C W + +FPWS
Sbjct: 277 SLMKNLAMARDLWSCGWKQTAFPWS 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,734
Number of Sequences: 5004
Number of extensions: 61029
Number of successful extensions: 223
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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