Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120325.Seq
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_9848| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_43734| Best HMM Match : bZIP_1 (HMM E-Value=3.3)                    30   2.3  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         29   3.1  
SB_613| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.4  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)                    28   7.2  
SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_45491| Best HMM Match : Agenet (HMM E-Value=1.4)                    28   9.5  
SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22)                    28   9.5  
SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)         28   9.5  
SB_51210| Best HMM Match : rve (HMM E-Value=2.2e-13)                   28   9.5  
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)              28   9.5  
SB_25892| Best HMM Match : PADR1 (HMM E-Value=5.3)                     28   9.5  
SB_11376| Best HMM Match : Agenet (HMM E-Value=0.69)                   28   9.5  
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.5  

>SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +2

Query: 110 IPFCDDSEFLNRLLKHIDPYPLSRMYYNAANTMFYTTMENYAVSNCKFTLRITITYLR 283
           +P+C    F+ R  K   PY L  + +     +    M++Y ++     +RI   Y R
Sbjct: 223 VPYCSGDVFVGRKTKETHPYGLQMLGHFIVKAVVQQLMDDYKINTTGTVVRIVTPYSR 280


>SB_9848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 259 EDYNNIFKVMENIRKHSNKNLNDQDELNIYLGVQSSNAKRKK 384
           EDY+N     E+  K S+    D+DE+++Y G  S  A   K
Sbjct: 150 EDYSNYDDFQESNSKKSDYGDGDEDEMSLYTGRHSEPASDDK 191


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = +1

Query: 238  VQLQVHIEDYNNIFKVMENIRKHSNKNLNDQDELNIYL 351
            V+LQ   E + N+ K + N+++ + KN+ ++D+L  +L
Sbjct: 1998 VKLQKLREKFENLEKQVNNVKEEAEKNVQEKDQLTGFL 2035


>SB_43734| Best HMM Match : bZIP_1 (HMM E-Value=3.3)
          Length = 218

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 131 EFLNRLLKHIDPYPLSRMYY--NAANTMFYTTMENYAVSNCKFTL 259
           E L+ L KH+    L+   +  N+  T FYT + NY   NC + L
Sbjct: 117 EELSNLRKHLVSIKLTEETFKENSETTKFYTGLPNYNTFNCVYKL 161


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 698 SQTRAGDEIASFLA-TVGCVECLAVNSSVFC-NF 603
           S+  AG    SFL  T  CV+C+ VNS+  C NF
Sbjct: 599 SELHAGSTKVSFLLKTSSCVKCVGVNSTFHCVNF 632


>SB_613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 136 FEQAAQTHRSVPAQSDVLQCGQYHVLHD--HGKLCRVQLQVHIEDYNNIFKVMENIR 300
           F  +   +R +  +S   Q  ++ V HD  H +LC++     ++++ +  K MEN R
Sbjct: 412 FFSSVPGYRKLNGESVQSQLHEFRVYHDLAHEELCKLNSCQLVDEFEHPLKSMENYR 468


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 280  KVMENIRKHSNKNLNDQDELNIYLGVQSSNAKRK 381
            +++E+ ++ S  ++ D DE      +QSSN KRK
Sbjct: 2487 EMVESFKRRSTTSMGDLDENEYVAELQSSNLKRK 2520



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 256  IEDYNNIFKVMENIRKHSNKNLNDQDELN 342
            +++YNN  K ++N+R   N  +N+   +N
Sbjct: 5238 LKEYNNTMKELDNVRHQLNARVNELQAIN 5266


>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
          Length = 553

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 238 HGIVFHGRVKHGIGR 194
           HG+VFHG  +HG GR
Sbjct: 250 HGVVFHGARQHGRGR 264


>SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1219

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
 Frame = +2

Query: 59  EKIQMLQPQQYINS------GTEIPFCDDSEFLNRLLKHIDPYPL 175
           EK+++ +P  +I+S      G+++P C D + LN+ LK    YP+
Sbjct: 130 EKMEVTEPTDWISSQVVVRKGSKLPLCIDPKDLNKALKR-SHYPM 173


>SB_45491| Best HMM Match : Agenet (HMM E-Value=1.4)
          Length = 228

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 53  RGEKIQMLQPQQYINSGTEIPFCDDSEFLNRLLKHIDPYPLSRM 184
           R E +Q LQP+Q  N  TE     D   L    +H + +PL R+
Sbjct: 137 RREYLQNLQPRQKWNGATESLRAGDIILLRDETEHRNDWPLGRV 180


>SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22)
          Length = 699

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 498 NGAGVSNHMWHRLKNDDGDDKPCLNCVIYVA 406
           NG  ++NH    +    G +K C+N V YVA
Sbjct: 65  NGRRIANHDMQGISFASGGEKDCVNMVGYVA 95


>SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
          Length = 1584

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 53   RGEKIQMLQPQQYINSGTEIPFCDDSEFLNRLLKHIDPYPLSRM 184
            R E +Q LQP+Q  N  TE     D   L    +H + +PL R+
Sbjct: 1493 RREYLQNLQPRQKWNGATESLRAGDIILLRDETEHRNDWPLGRV 1536


>SB_51210| Best HMM Match : rve (HMM E-Value=2.2e-13)
          Length = 331

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 53  RGEKIQMLQPQQYINSGTEIPFCDDSEFLNRLLKHIDPYPLSRM 184
           R E +Q LQP+Q  N  TE     D   L    +H + +PL R+
Sbjct: 240 RREYLQNLQPRQKWNGATESLRAGDIILLRDETEHRNDWPLGRV 283


>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 514 TQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVARN 666
           T TQ    Q+P    +H   + +P    PPK Q+    T+ H+T  T  ++
Sbjct: 718 TTTQHFYNQSPLHHQNHNTTLLQPVTITPPKPQHNTSTTSHHNTTKTTTQS 768


>SB_25892| Best HMM Match : PADR1 (HMM E-Value=5.3)
          Length = 130

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 134 FLNRLLKHIDPYPLSRMYYNAANTMFYTTMENYAVSNCKFTLRITITYLR*WKILGN 304
           ++N L++ +        Y  A +T FYTT +   +++CK  L++ +  L  W    N
Sbjct: 67  YVNDLIERLGDTVKCHQY--ADDTTFYTTDKPARITDCKGRLQVALNNLTTWSSESN 121


>SB_11376| Best HMM Match : Agenet (HMM E-Value=0.69)
          Length = 228

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 53  RGEKIQMLQPQQYINSGTEIPFCDDSEFLNRLLKHIDPYPLSRM 184
           R E +Q LQP+Q  N  TE     D   L    +H + +PL R+
Sbjct: 137 RREYLQNLQPRQKWNGATESLRAGDIILLRDETEHRNDWPLGRV 180


>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2229

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 516 ADAEARVTDAARVDLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSSEERSDF 677
           A+ EA VTD  R D    EDP  V     E+T+         H  D +++  D+
Sbjct: 779 AEFEALVTDTTRSDALDIEDPDDV----KEITKFLHERGIVMHYDDPNQDLQDY 828


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,374,432
Number of Sequences: 59808
Number of extensions: 489486
Number of successful extensions: 1525
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)