Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120325.Seq
(758 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-301|AAX52653.1| 386|Drosophila melanogaster CG31931-PA... 31 1.3
S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA polymerase... 31 2.3
AY128464-1|AAM75057.1| 659|Drosophila melanogaster RE19005p pro... 30 3.0
AY060958-1|AAL28506.1| 568|Drosophila melanogaster GM08907p pro... 30 3.0
AE014296-1984|AAN11876.1| 649|Drosophila melanogaster CG6091-PC... 30 3.0
AE014296-1983|AAF50041.1| 649|Drosophila melanogaster CG6091-PA... 30 3.0
AY070709-1|AAL48180.1| 652|Drosophila melanogaster SD02261p pro... 29 5.2
AE014296-3203|AAF49118.1| 652|Drosophila melanogaster CG8743-PA... 29 5.2
D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase... 29 6.9
AY071145-1|AAL48767.1| 520|Drosophila melanogaster RE18068p pro... 29 6.9
AE014297-1231|AAF54580.2| 520|Drosophila melanogaster CG4674-PA... 29 6.9
AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymera... 29 6.9
AE014298-1714|AAF48114.1| 1373|Drosophila melanogaster CG15737-P... 29 9.1
>AE014134-301|AAX52653.1| 386|Drosophila melanogaster CG31931-PA
protein.
Length = 386
Score = 31.5 bits (68), Expect = 1.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 664 SSLLSDVWNVWLLIVACSVTSAACQ*TA 581
+SLL ++W+ WL I AC +T A TA
Sbjct: 290 NSLLINIWDFWLCIAACDLTEKAGDETA 317
>S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA
polymerase-primase 180 kdasubunit protein.
Length = 1490
Score = 30.7 bits (66), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 220 HGKLCRVQLQVHIEDYNNIFKVMENIRKHSNKNLNDQDELNI 345
+G + + +I DY+ ++K+ NI++ NK L Q+EL+I
Sbjct: 1012 YGDTDSLMINTNITDYDQVYKIGHNIKQSVNK-LYKQEELDI 1052
>AY128464-1|AAM75057.1| 659|Drosophila melanogaster RE19005p
protein.
Length = 659
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 61 EDTNVAAATIHQQRYRNSVL------RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 222
E + V+ H +RN V+ RR V+++ A+THR P +S + ++H H H
Sbjct: 32 EQSVVSQTHNHAHNHRNVVIDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91
>AY060958-1|AAL28506.1| 568|Drosophila melanogaster GM08907p
protein.
Length = 568
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 61 EDTNVAAATIHQQRYRNSVL------RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 222
E + V+ H +RN V+ RR V+++ A+THR P +S + ++H H H
Sbjct: 32 EQSVVSQTHNHAHNHRNVVIDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91
>AE014296-1984|AAN11876.1| 649|Drosophila melanogaster CG6091-PC,
isoform C protein.
Length = 649
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 61 EDTNVAAATIHQQRYRNSVL------RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 222
E + V+ H +RN V+ RR V+++ A+THR P +S + ++H H H
Sbjct: 32 EQSVVSQTHNHAHNHRNVVIDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91
>AE014296-1983|AAF50041.1| 649|Drosophila melanogaster CG6091-PA,
isoform A protein.
Length = 649
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 61 EDTNVAAATIHQQRYRNSVL------RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 222
E + V+ H +RN V+ RR V+++ A+THR P +S + ++H H H
Sbjct: 32 EQSVVSQTHNHAHNHRNVVIDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91
>AY070709-1|AAL48180.1| 652|Drosophila melanogaster SD02261p
protein.
Length = 652
Score = 29.5 bits (63), Expect = 5.2
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -1
Query: 668 SFLATVGCVECLAVNSSVFCNFGGLSMNGSWIFCMCEVY 552
S T C+ L +F F LS +W++ C++Y
Sbjct: 511 SLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIY 549
>AE014296-3203|AAF49118.1| 652|Drosophila melanogaster CG8743-PA
protein.
Length = 652
Score = 29.5 bits (63), Expect = 5.2
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -1
Query: 668 SFLATVGCVECLAVNSSVFCNFGGLSMNGSWIFCMCEVY 552
S T C+ L +F F LS +W++ C++Y
Sbjct: 511 SLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIY 549
>D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase
alpha protein.
Length = 1505
Score = 29.1 bits (62), Expect = 6.9
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 145 AAQTH--RSVPAQSDVLQCGQYHVLHDHGKLCRVQLQVHIEDYNNIFKVMENIRKHSNKN 318
A TH R + ++Q Y V++ G + + +I DY+ ++K+ NI++ NK
Sbjct: 984 ALVTHKGRDLTNTQQLVQKMNYDVVY--GDTDSLMINTNITDYDQVYKIGHNIKQSVNK- 1040
Query: 319 LNDQDELNI 345
L Q EL+I
Sbjct: 1041 LYKQLELDI 1049
>AY071145-1|AAL48767.1| 520|Drosophila melanogaster RE18068p
protein.
Length = 520
Score = 29.1 bits (62), Expect = 6.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 84 NNTSTAVPKFRFATIQSF*TGCSNT*IRTRSVGCITM 194
NN++TAV K RF +Q + T S+ +R + V CI +
Sbjct: 204 NNSTTAVEKLRFTVLQ-YVTYYSHVPLRVQKVECIAV 239
>AE014297-1231|AAF54580.2| 520|Drosophila melanogaster CG4674-PA
protein.
Length = 520
Score = 29.1 bits (62), Expect = 6.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 84 NNTSTAVPKFRFATIQSF*TGCSNT*IRTRSVGCITM 194
NN++TAV K RF +Q + T S+ +R + V CI +
Sbjct: 204 NNSTTAVEKLRFTVLQ-YVTYYSHVPLRVQKVECIAV 239
>AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymerase
alpha 180K subunit protein.
Length = 1415
Score = 29.1 bits (62), Expect = 6.9
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 145 AAQTH--RSVPAQSDVLQCGQYHVLHDHGKLCRVQLQVHIEDYNNIFKVMENIRKHSNKN 318
A TH R + ++Q Y V++ G + + +I DY+ ++K+ NI++ NK
Sbjct: 984 ALVTHKGRDLTNTQQLVQKMNYDVVY--GDTDSLMINTNITDYDQVYKIGHNIKQSVNK- 1040
Query: 319 LNDQDELNI 345
L Q EL+I
Sbjct: 1041 LYKQLELDI 1049
>AE014298-1714|AAF48114.1| 1373|Drosophila melanogaster CG15737-PA
protein.
Length = 1373
Score = 28.7 bits (61), Expect = 9.1
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 444 RRRRSSTGATYGLTRRRRSSAG-SHADAEARVTDAAR 551
+RR SS GAT R+ S +G S AE+ T+A R
Sbjct: 255 KRRNSSAGATAAYYRKSESESGSSEGAAESTETEATR 291
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,670,821
Number of Sequences: 53049
Number of extensions: 719561
Number of successful extensions: 2175
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2175
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3478915869
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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