Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120325.Seq
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z81037-4|CAB02747.2|  391|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    29   2.7  
AC025716-3|AAK39618.1|  690|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    29   4.7  
Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81531-8|CAB04322.2|  344|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 441 RRRRRSSTGATYGLTRRRRSSAGSHADAEARVTDAAR 551
           + RR SS G+ YG T R RSS  S + +  R    +R
Sbjct: 109 KSRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSR 145


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 447 RRRSSTGATYGLTRRRRSSAGSHADAEARVTDAAR 551
           RR SS G+ YG T R RSS  S + +  R    +R
Sbjct: 111 RRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSR 145


>Z81037-4|CAB02747.2|  391|Caenorhabditis elegans Hypothetical
           protein C17E4.6 protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +3

Query: 447 RRRSSTGATYGLTRRRRSSAGSHADAEARVTDAARVDLAHTEDPGAVH*QAAEVTEHATI 626
           RRRSS         R  SS   H++  +  +  +R    H E+ G    +A++   +   
Sbjct: 4   RRRSSRAVKNKKESREGSSNDEHSNESSTRSSKSRDGSHHNEEEGETS-KASDPQINEES 62

Query: 627 NSQTFHTSDSSEERSD 674
             +T + SD  EE  D
Sbjct: 63  EDETSNASDEQEENDD 78


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 447 RRRSSTGATYGLTRRRRSSAGSHADAEARVTDAAR 551
           RR SS G+ YG T R RSS  S + + +R    +R
Sbjct: 105 RRSSSRGSVYGRTGRSRSSKRSRSRSRSRSRSRSR 139


>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
           protein B0222.9 protein.
          Length = 1217

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 605 FGGLSMNGSWIFCMCEVYPGGVCNPSF 525
           FGG   N SWI CMC +    +  P++
Sbjct: 708 FGGKVNNASWIACMCAIVAKKLNRPTY 734


>AC025716-3|AAK39618.1|  690|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.10 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 199 QYHVLHDHGKLCRVQLQVHIEDYNNIFKVMENIRKHS 309
           QY+VL +H   CRV     I D   I K+ E IR+H+
Sbjct: 602 QYNVLGNH---CRVLTSQGISDRTTIDKLQETIREHT 635


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 605 FGGLSMNGSWIFCMCEVYPGGVCNPSFCV 519
           FGG   N SWI C+C V    +  P++ V
Sbjct: 740 FGGKLNNASWIACICSVVAKKLNRPTYGV 768


>Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical
           protein Y49E10.23b protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 97  QRYRNSVLRRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDHGKLCRVQL 246
           +R R S L     FE+A++ +  + ++ D+LQ  Q  +  D  KLC  Q+
Sbjct: 292 ERLRTSQLEMATKFEEASRENTDLLSKIDILQ-DQLSLEEDRRKLCEEQI 340


>Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical
           protein Y49E10.23a protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 97  QRYRNSVLRRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDHGKLCRVQL 246
           +R R S L     FE+A++ +  + ++ D+LQ  Q  +  D  KLC  Q+
Sbjct: 292 ERLRTSQLEMATKFEEASRENTDLLSKIDILQ-DQLSLEEDRRKLCEEQI 340


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +1

Query: 589 IDKPPKLQNTLLLTARHSTHPTVARNEAISSPALVWLSTVTKSCLQDFKLSPLSSN 756
           +D+ P + +T  + +  +TH T +   +       W  T    C  DF    L SN
Sbjct: 506 LDRDPLIDSTEHVDSSENTHATTSGTTSAKGAGSAWQETNRAPCEDDFDTIRLVSN 561


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +1

Query: 589 IDKPPKLQNTLLLTARHSTHPTVARNEAISSPALVWLSTVTKSCLQDFKLSPLSSN 756
           +D+ P + +T  + +  +TH T +   +       W  T    C  DF    L SN
Sbjct: 506 LDRDPLIDSTEHVDSSENTHATTSGTTSAKGAGSAWQETNRAPCEDDFDTIRLVSN 561


>Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical
           protein Y57G11A.3 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 555 DLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSSEERSDFVACPRLAFD 704
           ++AHT DP     Q  E  EHA  + + F  S   ++    V C  L+ D
Sbjct: 251 EIAHTMDP-----QNTEEDEHAASDEEEFAVSSKPKQLQGVVKCEFLSLD 295


>Z81531-8|CAB04322.2|  344|Caenorhabditis elegans Hypothetical
           protein F36D3.9 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 599 GLSMNGSWIFCMCEVYPGGVCNPSFCVCV*SG*RTAPACQTICGTG*RTT 450
           G+   G ++   C+ YP   CN   CV +       P C+  C  G RTT
Sbjct: 187 GVVTGGDYLGTGCKPYPIRPCNSDNCVNL-----QTPPCRLSCQPGYRTT 231


>U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical
           protein C49H3.3 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 483 TRRRRSSAGSHADAEARVTDAARVDLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSS 659
           T++   +A     A  +  +  + D   T+  G  + +  EVT  ATIN++T    D S
Sbjct: 19  TKKEPKTAALLQKAIDKRDEYEKQDAEKTKTDGTANEEKMEVTSQATINTKTLKKKDGS 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,184,727
Number of Sequences: 27780
Number of extensions: 370666
Number of successful extensions: 1236
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)