Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120325.Seq
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.58 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.1  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   4.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 604 KLQNTL--LLTARHSTHPTVARNEAISSPALVWLSTVTKSCLQDFKLS 741
           KL+N L  +L   H  HP + R      P L  L+T+    L  FK++
Sbjct: 365 KLRNALQTVLAQNHPQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMT 412


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 453 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 346
           DD D K  + C+   A V   LIF  L   RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 453 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 346
           DD D K  + C+   A V   LIF  L   RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -1

Query: 596 LSMNGSW--IFCMCEVYPGGVCNPSFCVC 516
           LS+N S   I C+ +   GG C    C+C
Sbjct: 74  LSINHSACAIRCLAQRRKGGSCRNGVCIC 102


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 705 SRKPNEGRRRNRFVPRY 655
           SRK + GRRR R  PRY
Sbjct: 402 SRKES-GRRRRRRTPRY 417


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 152 KHIDPYPLSRMYYNAANTMFYTTMEN 229
           KH++   L R YY  +N +  TT+++
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKH 407


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 94  QQRYRNSVLRRFRVFEQAAQTHRSVPA 174
           ++ YR+ +L  FR  + A+Q H+ + A
Sbjct: 5   KEHYRHILLFYFRKGKNASQAHKKLCA 31


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 152 KHIDPYPLSRMYYNAANTMFYTTMEN 229
           KH++   L R YY  +N +  TT+++
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKH 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,565
Number of Sequences: 438
Number of extensions: 4718
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)