Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120325.Seq
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    32   0.36 
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein...    28   7.7  

>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -1

Query: 743 GLSLKSCRHDFVTV-ESQTRAGDEIASFLATVGCVECLAVNSSVFCNFGGLSMNGSWIFC 567
           G     CRH    +        D    F  T+ C  C  + ++V C+ GG S NGS ++C
Sbjct: 754 GAPRTDCRHTCAALCHPSAPCPDLRCEFSVTITC-SCGRITATVPCDAGGRSANGSNVYC 812


>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 604

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 758 LFELSGLSLKSCRHDFVTVESQTRA 684
           LF    LSLK  +HDFV V++ T++
Sbjct: 29  LFPRPSLSLKPMKHDFVCVKATTKS 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,915,892
Number of Sequences: 28952
Number of extensions: 324775
Number of successful extensions: 1005
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)