Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120324.Seq
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   3.0  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    25   5.3  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    24   9.3  

>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 371 YVNKFNVYVCSFHPVV*T 424
           YVN +N YVCS  P+V T
Sbjct: 24  YVNFYNKYVCSNLPIVKT 41


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 291 DIFILSTNALKQDVFTSK 344
           D+ +L+TN LK+D+ +SK
Sbjct: 96  DVLMLTTNLLKKDLMSSK 113


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 15  NLGQHSPVYRMTSL 56
           N G+HSP+ R+TSL
Sbjct: 437 NAGRHSPLNRLTSL 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,508,488
Number of Sequences: 5004
Number of extensions: 23127
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)