Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120324.Seq
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0344 - 23316919-23317314,23317474-23317868,23320889-233213...    29   2.3  
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456...    27   6.9  

>03_05_0344 -
           23316919-23317314,23317474-23317868,23320889-23321384,
           23322346-23322366
          Length = 435

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 163 RLVYSSVWITELKFILSEAREAWQ 92
           R V+S +W T+ K + SE R+ WQ
Sbjct: 294 RKVWSDLWSTQAKALRSEMRKIWQ 317


>02_01_0611 -
           4567839-4568144,4568280-4569209,4569301-4569566,
           4569662-4569970,4570497-4570647,4570958-4571012,
           4571137-4571512,4571560-4571797,4571878-4572096,
           4572629-4572910
          Length = 1043

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 301 IKISLTNIKSRQRKQKLHIQ 242
           ++I L  +K+R R+QK+H+Q
Sbjct: 939 VEIQLNRVKNRLRQQKIHLQ 958


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,924,979
Number of Sequences: 37544
Number of extensions: 125367
Number of successful extensions: 215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)