Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120324.Seq
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    28   3.3  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    27   4.4  

>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 249 CSFCFLCLDLILVNDIFILSTN 314
           C  C   +DL +VN+ F+LSTN
Sbjct: 450 CGACSCLIDLSVVNNKFVLSTN 471


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 362 HYRIHPFGCEHILLKSVCA 306
           HYR H  GCE  LL   CA
Sbjct: 461 HYRCHEKGCEEFLLDVRCA 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,626,819
Number of Sequences: 28952
Number of extensions: 113437
Number of successful extensions: 171
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)