Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120323.Seq
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    26   5.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.8  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   7.6  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   7.6  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   7.6  

>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 95  TTPLYNIAMYKSDYDAIKNK-NIKTLFDLYNDRLPINFLDTSATSPAVRKTPG 250
           TTP++NI     DYDA +N  N  T      ++ P+     +A       T G
Sbjct: 218 TTPIHNIEKLWRDYDAFENSVNRATARKFVAEKSPVYMAARAAMRELSNLTEG 270


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +2

Query: 83   IKDSTTPLYNIAMYKSDYDAIKNKNIKTLFDLYNDRLPINFLDTSATSPAVRKTPGKNLR 262
            IKD +   + I   ++  + + N +  T FD+ ND   +  + T  T P     P K   
Sbjct: 860  IKDISNQTHEINSVENKAETVSNNSKITNFDIPNDATSLPTIITHPTPPPPPPLPVKTSL 919

Query: 263  KT 268
             T
Sbjct: 920  NT 921


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
 Frame = +2

Query: 2   EALRNNIELVQPESDAVRRIVIKMTQEIKDSTTPLYNIAMYKSDYDAIK-NKNIKTLFDL 178
           E + N IE    E+      + K T+ I D  T L +   + S     +  +  + L ++
Sbjct: 678 ETIENLIESFDYENSTPLSQLTKYTEIINDLITCLNSFLYHVSATKKKEFTRQYQLLKNI 737

Query: 179 YNDRLPINFLDTSATSPAVRKTPGKNLRKTICCRLAATNVPIDPK 313
            +++L      T     A RK   + L  +    L+ T VP DPK
Sbjct: 738 SSNKLGSISGITKHKKKAARKYVSELLSNSWLSNLSETQVPYDPK 782


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 537 SLKNFCSCNIVQPFHTVGDH 478
           SLKNF S N    +H V DH
Sbjct: 814 SLKNFSSSNDTSVYHDVQDH 833


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 403 DEDFLKLKALEFSKDIVNEKLQKIIVVTDGMKRLYDIATAKIL*R 537
           D D L L      KD+++ K+ +I +  DG+     +  A+ L R
Sbjct: 94  DTDVLMLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLGLARDLYR 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,807
Number of Sequences: 5004
Number of extensions: 57405
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)