Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120323.Seq
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0419 - 20583812-20584123,20585911-20586006,20586195-205862... 31 1.1
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 31 1.5
10_05_0108 - 9247498-9247854 30 2.0
04_04_1599 + 34700250-34700437,34700799-34700869,34701029-347010... 29 3.5
03_01_0480 - 3676529-3676687,3676767-3676931,3677044-3677220,367... 29 3.5
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 29 4.6
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130... 29 6.1
04_03_0433 + 15878709-15878798,15879271-15879336,15880608-158807... 29 6.1
>06_03_0419 -
20583812-20584123,20585911-20586006,20586195-20586298,
20586565-20586649
Length = 198
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 702 NLPIDEKAFCHCYHCHCTVSMETATRKNLHSFQYDRDCTGLAF*ASCHSWRRLVKS 535
N+ + KAFC CY T + + +L + G ++ +CH WR L S
Sbjct: 112 NVQLTSKAFC-CYEAEGTTLRDASCALHLKNEAACHPSCGQSYLKACHFWRYLATS 166
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 30.7 bits (66), Expect = 1.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 582 NLYNLDHIEMNVNFYELLFPLTLYNDND 665
++Y L ++++ +E++FPL +NDND
Sbjct: 306 SMYQLMQPQIDIILFEIIFPLMCFNDND 333
>10_05_0108 - 9247498-9247854
Length = 118
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -2
Query: 261 RRFLPGVLRTAGLVADVSKKLIGSLSLYRSNKVLMF 154
RR +P + T ++ + K+L+ SLS Y S+KVL +
Sbjct: 73 RRAMPTIPTTTTVIGSLFKELVFSLSPYTSSKVLSY 108
>04_04_1599 +
34700250-34700437,34700799-34700869,34701029-34701093,
34701193-34701273,34701328-34701408,34701632-34701651,
34701795-34701867
Length = 192
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +3
Query: 594 LDHIEMNVNFYELLFPLTLYNDNDNSDKTLSHQLVNYIFLASNYFQN---CAKNFNYMRE 764
LDH E+ V +YEL+F L D K H L+ + LA + N C N R
Sbjct: 117 LDHSELQVLYYELIFADLL----DGFHKNWDHGLIAELTLAQSQLWNIDTCGVAAN--RL 170
Query: 765 LFNVFGPFKQIDFMVMFVIK 824
L ++ ++ I + MF+++
Sbjct: 171 LPSIPEEYQAIQIIAMFIME 190
>03_01_0480 -
3676529-3676687,3676767-3676931,3677044-3677220,
3678170-3678273,3678700-3678843,3679831-3679898,
3680059-3680162,3680759-3680767,3681572-3681657,
3681918-3683373
Length = 823
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 148 FYGVIIAFVHGNVVQRRGRIFNFLRHFYDYSP 53
F V+IA HG +V + FN ++H Y P
Sbjct: 351 FVAVLIACSHGGMVDKGREFFNLMQHKYRVEP 382
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 663 DNSDKTLSHQLVNYIFLASNYFQNCAKNFNYMRELFNVFGPFKQ 794
D + LS + + L S YF C K + +R +F ++G Q
Sbjct: 861 DGGSENLSSSVADSQTLMSLYFALCTKKHSLLRHVFAIYGSLPQ 904
>08_02_1566 +
27909297-27909390,27909542-27909645,27912899-27913098,
27913214-27913314,27913427-27914130,27914671-27914834,
27914941-27915100
Length = 508
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 693 LVNYIF--LASNYFQNCAKNFNYMRELFNVFGPF 788
LVN + L S + N A+ + Y+ L +V+GPF
Sbjct: 417 LVNLLLCGLFSRLYSNLARQYRYVMHLVDVYGPF 450
>04_03_0433 +
15878709-15878798,15879271-15879336,15880608-15880743,
15880813-15880900,15881674-15881826,15882214-15882376,
15882446-15882630,15882696-15882869,15883222-15883367,
15883498-15883621,15883702-15883882,15884986-15885145,
15885235-15885276,15885349-15885467,15885548-15885746,
15886263-15886394,15887546-15887649,15887750-15887929,
15888202-15888249
Length = 829
Score = 28.7 bits (61), Expect = 6.1
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +3
Query: 582 NLYNLDHIEMNVNFYELLFPLTLYNDND 665
++Y L ++++ +E++FPL +ND+D
Sbjct: 357 SMYQLMQPQIDIILFEIIFPLMCFNDSD 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,147,324
Number of Sequences: 37544
Number of extensions: 325624
Number of successful extensions: 1024
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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