Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120323.Seq
         (841 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)              31   1.5  
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)                 30   2.0  
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)                       29   4.7  
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)            29   4.7  
SB_50296| Best HMM Match : TP2 (HMM E-Value=9.8)                       28   8.2  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              28   8.2  
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  28   8.2  
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
          Length = 492

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 130 AFVHGNVVQRRGRIFNFLRHFYDYSP 53
           AFVHG ++QR+G   N L H  D+ P
Sbjct: 227 AFVHGEMLQRKGGTVNDLFHVTDWYP 252


>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1240

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 133 IAFVHGNVVQRRGRIFNFLRHFYDYSP 53
           +AFVH  +++R GR+++ L H  D+ P
Sbjct: 437 VAFVHSPLIKRPGRVYDGLMHASDWLP 463


>SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)
          Length = 269

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 409 LRLLIFCVYFLFRSRHLQRHRLPARLLT 326
           L + +FC YF+F+S   QR R+ +  +T
Sbjct: 177 LTMTLFCYYFIFKSAKYQRQRIASESVT 204


>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
          Length = 680

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
 Frame = +3

Query: 522 KNSLETLPSAANYGSLLKRLNLYNLDHIEMNVNFYELLFPLT--LYNDNDNSDKTLSHQL 695
           +NSLE LP +    S L+ LNL      ++  +F   L  LT    ++ND S+ ++S  L
Sbjct: 95  ENSLEELPESLGKLSKLRVLNLTGNKLEKLRDDFGAGLASLTELRIDENDLSELSVSFTL 154

Query: 696 ---VNYIFLASNYFQNCAKNFNYMREL 767
              +  + L  N+ +   ++F  +R+L
Sbjct: 155 MKNLKVLELGDNHIERLPEDFGNLRKL 181


>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
          Length = 1058

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -3

Query: 815 KHDHKVDLFKRAEHV-KKFAHI---VEVFSAVLKIVTGQKYVIYQLMRKRFVT 669
           KH  K++LF+  +H+  K A +   VE FS +++      Y+I+ +  + + T
Sbjct: 133 KHQEKINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTT 185


>SB_50296| Best HMM Match : TP2 (HMM E-Value=9.8)
          Length = 278

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 11  RNNIELVQPESDAVRRIVIKMTQEIKDSTTPLYNIAMYKSDY--DAIKNKNIKTL 169
           R    L    +DA+    +K+T ++   T P+Y++    +D+  D I N  ++TL
Sbjct: 25  RYETALASRTTDALADSFLKLTTKLVGMTLPIYSVVDLHNDFVSDYIINNELRTL 79


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 158 CFCFLWRHNRFCTWQCC 108
           C+C+ + H+ +C + CC
Sbjct: 503 CYCYYYYHHYYCCYYCC 519


>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 263  SADSCREFCELLDWL 219
            SAD  ++FCEL+DWL
Sbjct: 1078 SADWSKDFCELVDWL 1092


>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 555 WRRLVKSLKNFCSCNIVQPFHTVGDHNN 472
           WR  + ++ +FCSCN+  P +T   H N
Sbjct: 285 WR--LSAVTSFCSCNLCVPSNTPSRHGN 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,926,971
Number of Sequences: 59808
Number of extensions: 413386
Number of successful extensions: 1702
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1702
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)