Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120323.Seq
         (841 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069765-1|AAL39910.1|  177|Drosophila melanogaster RE01453p pro...    31   2.6  
AE014298-1491|AAF47955.1|  177|Drosophila melanogaster CG15211-P...    31   2.6  
AY069822-1|AAL39967.1|  655|Drosophila melanogaster SD07188p pro...    29   7.9  
AY058592-1|AAL13821.1| 1311|Drosophila melanogaster LD28477p pro...    29   7.9  
AF217802-1|AAG40586.1| 1311|Drosophila melanogaster xnp/atr-x DN...    29   7.9  
AE014297-3805|AAN14055.1| 1311|Drosophila melanogaster CG4548-PB...    29   7.9  
AE014297-3804|AAF56471.1| 1311|Drosophila melanogaster CG4548-PA...    29   7.9  

>AY069765-1|AAL39910.1|  177|Drosophila melanogaster RE01453p
           protein.
          Length = 177

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
 Frame = -2

Query: 309 GSIGTFVAASRQQIVFRRFLPGVLRTAGLVADVSKKLIGSLSLYRSNKVLMFLFFMA-S* 133
           GS G F +A R  I + R +PG+++    V  +    + +  L  +    MF+  ++   
Sbjct: 28  GSGGGFWSAIRLNIDYFRTIPGIIKIVEFVLGIICMALAAPPLASATSFFMFVIVISFII 87

Query: 132 SLLYMAMLYSGVVESLISCV--IFMTIRRTASLS 37
           ++L +A  + G+ E+L   V  IF  +  TA L+
Sbjct: 88  NILLIAAYFLGIREALNVAVNWIFSELITTAVLT 121


>AE014298-1491|AAF47955.1|  177|Drosophila melanogaster CG15211-PA
           protein.
          Length = 177

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
 Frame = -2

Query: 309 GSIGTFVAASRQQIVFRRFLPGVLRTAGLVADVSKKLIGSLSLYRSNKVLMFLFFMA-S* 133
           GS G F +A R  I + R +PG+++    V  +    + +  L  +    MF+  ++   
Sbjct: 28  GSGGGFWSAIRLNIDYFRTIPGIIKIVEFVLGIICMALAAPPLASATSFFMFVIVISFII 87

Query: 132 SLLYMAMLYSGVVESLISCV--IFMTIRRTASLS 37
           ++L +A  + G+ E+L   V  IF  +  TA L+
Sbjct: 88  NILLIAAYFLGIREALNVAVNWIFSELITTAVLT 121


>AY069822-1|AAL39967.1|  655|Drosophila melanogaster SD07188p
           protein.
          Length = 655

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 567 LLKRLNL-YNLDHIEMNVNFYELLFPL---TLYNDNDNSDKTLSHQLVN 701
           LL+ LN+  + DH E+N N    L P     LYN+ +N D T+   L+N
Sbjct: 543 LLQLLNMKISKDHQELNQNQVIQLVPTYLQQLYNEMNNGDPTMYKDLLN 591


>AY058592-1|AAL13821.1| 1311|Drosophila melanogaster LD28477p protein.
          Length = 1311

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 567  LLKRLNL-YNLDHIEMNVNFYELLFPL---TLYNDNDNSDKTLSHQLVN 701
            LL+ LN+  + DH E+N N    L P     LYN+ +N D T+   L+N
Sbjct: 1199 LLQLLNMKISKDHQELNQNQVIQLVPTYLQQLYNEMNNGDPTMYKDLLN 1247


>AF217802-1|AAG40586.1| 1311|Drosophila melanogaster xnp/atr-x DNA
            helicase protein.
          Length = 1311

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 567  LLKRLNL-YNLDHIEMNVNFYELLFPL---TLYNDNDNSDKTLSHQLVN 701
            LL+ LN+  + DH E+N N    L P     LYN+ +N D T+   L+N
Sbjct: 1199 LLQLLNMKISKDHQELNQNQVIQLVPTYLQQLYNEMNNGDPTMYKDLLN 1247


>AE014297-3805|AAN14055.1| 1311|Drosophila melanogaster CG4548-PB,
            isoform B protein.
          Length = 1311

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 567  LLKRLNL-YNLDHIEMNVNFYELLFPL---TLYNDNDNSDKTLSHQLVN 701
            LL+ LN+  + DH E+N N    L P     LYN+ +N D T+   L+N
Sbjct: 1199 LLQLLNMKISKDHQELNQNQVIQLVPTYLQQLYNEMNNGDPTMYKDLLN 1247


>AE014297-3804|AAF56471.1| 1311|Drosophila melanogaster CG4548-PA,
            isoform A protein.
          Length = 1311

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 567  LLKRLNL-YNLDHIEMNVNFYELLFPL---TLYNDNDNSDKTLSHQLVN 701
            LL+ LN+  + DH E+N N    L P     LYN+ +N D T+   L+N
Sbjct: 1199 LLQLLNMKISKDHQELNQNQVIQLVPTYLQQLYNEMNNGDPTMYKDLLN 1247


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,239,658
Number of Sequences: 53049
Number of extensions: 588424
Number of successful extensions: 1801
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)