Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120323.Seq
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    23   2.7  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   2.7  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   2.7  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   3.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.1  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   8.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   8.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   8.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   8.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   8.1  

>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 537 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 662
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 537 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 662
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 537 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 662
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 537 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 662
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 537 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 662
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 537 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 662
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 537 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 662
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 537 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 662
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 537 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 662
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 320 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 362


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 537 TLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 662
           +L +  NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 320 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 362


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 555 NYGSLLKRLNLYNLDHIEMNVNFYELL-FPLTLYNDN 662
           NY +     N +N + +  N+N+ E +  P+ +Y  N
Sbjct: 93  NYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 696 VNYIFLASNYFQNCAKNFNYM 758
           ++YIFL  N FQ+ +++F  +
Sbjct: 179 LDYIFLIFNQFQDFSESFQIL 199


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 696 VNYIFLASNYFQNCAKNFNYM 758
           ++YIFL  N FQ+ +++F  +
Sbjct: 179 LDYIFLIFNQFQDFSESFQIL 199


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 696 VNYIFLASNYFQNCAKNFNYM 758
           ++YIFL  N FQ+ +++F  +
Sbjct: 179 LDYIFLIFNQFQDFSESFQIL 199


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
 Frame = +3

Query: 456 RKASKNYCGHRRYETVVRYCNCKNSLETLPSAANYGSLLKRLNLYNLDHIEMNVNFYELL 635
           R+ SK     RR     +     +SL    + +NY +     N  N   +  N+N+ E +
Sbjct: 60  RETSKERSRDRRERERSKEPKIVSSLSNNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQI 119

Query: 636 ---FPLTLYNDN 662
               P+ +Y  N
Sbjct: 120 PVPVPVPIYCGN 131


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 441 QRHCQRKASKNYCGHRRYE 497
           +R C R  ++ Y   RRYE
Sbjct: 1   ERSCSRDRNREYRKDRRYE 19


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 441 QRHCQRKASKNYCGHRRYE 497
           +R C R  ++ Y   RRYE
Sbjct: 1   ERSCSRDRNREYRKDRRYE 19


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +3

Query: 657 DNDNSDKTLSHQLVNYIFLASNYFQNCAKNFNYMRELFNV 776
           D    +++   ++++ +  + NY  N   N NY +  +N+
Sbjct: 291 DRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLYYNI 330


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 441 QRHCQRKASKNYCGHRRYE 497
           +R C R  S+ Y   RRY+
Sbjct: 250 ERSCSRDRSREYKKDRRYD 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,993
Number of Sequences: 438
Number of extensions: 4190
Number of successful extensions: 41
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)