Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120323.Seq
         (841 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59020.1 68416.m06578 importin beta-2 subunit family protein ...    33   0.18 
At4g10430.3 68417.m01715 expressed protein                             30   1.7  
At4g10430.2 68417.m01713 expressed protein                             30   1.7  
At4g10430.1 68417.m01714 expressed protein                             30   1.7  
At1g78990.1 68414.m09210 transferase family protein low similari...    30   1.7  
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t...    29   2.9  
At3g28650.1 68416.m03576 DC1 domain-containing protein  similar ...    29   2.9  
At2g31660.1 68415.m03865 importin beta-2 subunit family protein ...    29   3.8  
At5g57880.1 68418.m07240 expressed protein  ; expression support...    29   5.1  
At1g32910.1 68414.m04054 transferase family protein low similari...    29   5.1  
At4g02190.1 68417.m00291 DC1 domain-containing protein contains ...    28   6.7  
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa...    28   6.7  
At5g27310.1 68418.m03261 expressed protein                             28   8.9  
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa...    28   8.9  

>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1112

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 570 LKRLNLYNLDHIEMNVNFYELLFPLTLYNDND 665
           + + ++YNL    +N   +E++FPL  +NDND
Sbjct: 368 ISKSSMYNLLQPHLNTLLFEIVFPLMCFNDND 399


>At4g10430.3 68417.m01715 expressed protein
          Length = 347

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = -2

Query: 309 GSIGTFVAASRQQIVFRRFLPGVLRTAGLVADVSKKLIGSLSLYRSNKVLMFLFFMAS*S 130
           G   +F+  S+ Q  F R   G +    L  DV  K+    + YR    L+FLFF A  +
Sbjct: 81  GETSSFLP-SKPQGRFVRMFCGPVNVRALRKDVQLKVKEEYNRYRDKTALLFLFFPA--T 137

Query: 129 LLYMAMLYSG 100
           LL +   Y G
Sbjct: 138 LLILRSYYWG 147


>At4g10430.2 68417.m01713 expressed protein
          Length = 271

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = -2

Query: 309 GSIGTFVAASRQQIVFRRFLPGVLRTAGLVADVSKKLIGSLSLYRSNKVLMFLFFMAS*S 130
           G   +F+  S+ Q  F R   G +    L  DV  K+    + YR    L+FLFF A  +
Sbjct: 5   GETSSFLP-SKPQGRFVRMFCGPVNVRALRKDVQLKVKEEYNRYRDKTALLFLFFPA--T 61

Query: 129 LLYMAMLYSG 100
           LL +   Y G
Sbjct: 62  LLILRSYYWG 71


>At4g10430.1 68417.m01714 expressed protein
          Length = 347

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = -2

Query: 309 GSIGTFVAASRQQIVFRRFLPGVLRTAGLVADVSKKLIGSLSLYRSNKVLMFLFFMAS*S 130
           G   +F+  S+ Q  F R   G +    L  DV  K+    + YR    L+FLFF A  +
Sbjct: 81  GETSSFLP-SKPQGRFVRMFCGPVNVRALRKDVQLKVKEEYNRYRDKTALLFLFFPA--T 137

Query: 129 LLYMAMLYSG 100
           LL +   Y G
Sbjct: 138 LLILRSYYWG 147


>At1g78990.1 68414.m09210 transferase family protein low similarity
           to acetyl CoA: benzylalcohol acetyltransferase Clarkia
           breweri GI:3170250, GI:6166336, Clarkia concinna
           GI:6166326, anthranilate
           N-hydroxycinnamoyl/benzoyltransferase Dianthus
           caryophyllus GI:2239091; contains Pfam profile PF02458
           transferase family
          Length = 455

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 376 KESKRRKLED-EDFL-KLKALEFSKDIVNEKLQKIIVVTDGMKRLYD 510
           K  KR KLE    FL KL A   +KD V  K  K+ +V DG +RL +
Sbjct: 251 KNGKRTKLESFSAFLWKLVAEHAAKDPVPIKTSKLGIVVDGRRRLME 297


>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
           T15B16.10 similar to A. thaliana CHP-rich proteins
           encoded by T10M13, GenBank accession number AF001308
          Length = 667

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 711 KICNLPIDEKAFCHCYHCHCTVSM 640
           ++C   ID+K F HC  C+ T+ M
Sbjct: 211 RLCGRKIDDKLFYHCSSCNFTLDM 234


>At3g28650.1 68416.m03576 DC1 domain-containing protein  similar to
           hypothetical protein GI:4204272 from [Arabidopsis
           thaliana] contains weak PHD zinc finger motifs contains
           weak PHD zinc finger motifs DC1 domain, a divergent
           protein kinase C domain of unknown function.
          Length = 665

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = -2

Query: 684 KAFCHCYHCHCTVSMETATRKNLHSFQYDRDCTGLAF*ASCHSWRRLVKSLKNFC 520
           +  CH  HCHC           L  F  +  C+   F + C SW  +VK  K  C
Sbjct: 613 RPLCHNCHCHCPGPF------ILKDFVEECFCSYYCF-SRCKSWMSIVKKEKGIC 660


>At2g31660.1 68415.m03865 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1040

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 570 LKRLNLYNLDHIEMNVNFYELLFPLTLYNDND 665
           + + ++Y L    ++V  +E++FPL  +NDND
Sbjct: 334 ISKNSMYKLLLPRLDVLLFEIVFPLMCFNDND 365


>At5g57880.1 68418.m07240 expressed protein  ; expression supported
           by MPSS
          Length = 385

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +3

Query: 597 DHIEMNVNFYELLFPLTLYNDNDNSDKTLSHQLVNYIFLASNYFQNCAKNFNYMRE 764
           +H+ ++++F   L  L+  + ND++    SHQ V++IF +     +  +N   + E
Sbjct: 160 EHLRISIDF---LLELSEADSNDSNFSNWSHQAVDFIFASLKKLISMGRNLESVEE 212


>At1g32910.1 68414.m04054 transferase family protein low similarity
           to anthranilate N-hydroxycinnamoyl/benzoyltransferase
           Dianthus caryophyllus GI:2239091, benzylalcohol
           acetyltransferase Clarkia breweri GI:6166336; contains
           Pfam profile PF02458 transferase family
          Length = 464

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 385 KRRKLED-EDFL-KLKALEFSKDIVNEKLQKIIVVTDGMKRLYD 510
           +R KLE    FL KL A    +D+V+ K  K+ +V DG +RL +
Sbjct: 257 QRTKLESFSAFLWKLVAKHTGRDLVSNKNSKMGIVVDGRRRLME 300


>At4g02190.1 68417.m00291 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 659

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 711 KICNLPIDEKAFCHCYHCHCTVSMETATRKNLHSFQ 604
           ++C   ID   F HC  C+ T+ M  A      SF+
Sbjct: 206 RLCEKKIDSPLFYHCSPCNFTLDMRCALNPPSISFE 241


>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 255

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 738 RSFENSYWPKICNLPIDEKAFCHCYHCH-CTV 646
           +S    Y+ KIC L  DE+   HC +C+ C V
Sbjct: 82  KSSMGKYFCKICKLYDDERKIYHCPYCNLCRV 113


>At5g27310.1 68418.m03261 expressed protein
          Length = 370

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 379 ESKRRKLEDEDFLKLKALEFSKDIVNEKLQKIIVVTDGMKRLYDIATAK 525
           E    K   ED   +K  +  K++ N+K+ +++ + +  K+  D+A AK
Sbjct: 233 EDVTTKKPHEDGSLIKKTKTEKELKNKKVDEMVKLFEAAKKAADVANAK 281


>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
           domain
          Length = 537

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
 Frame = +1

Query: 628 SCCFH*HCTMTMITVTKRFL--------INW*ITYFWPVTIFKTALKTSTICANFLTCSA 783
           +CC   H  +   TV+K  L        +NW +    P    K  ++ +T C N ++CSA
Sbjct: 260 NCCEDAHSPVDCETVSKWLLKNKDESENMNWILAKTKPCPKCKRPIEKNTGC-NHMSCSA 318

Query: 784 RLNKSTLWSCL 816
                  W+CL
Sbjct: 319 PCRHYFCWACL 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,216
Number of Sequences: 28952
Number of extensions: 277967
Number of successful extensions: 958
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)