Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120322.Seq
         (683 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CA698 Cluster: cation channel family protein; n...    34   3.7  
UniRef50_Q22B76 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_A0Q261 Cluster: Transglutaminase-like enzyme, putative ...    33   8.6  

>UniRef50_UPI00006CA698 Cluster: cation channel family protein; n=2;
           Tetrahymena thermophila SB210|Rep: cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 2774

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 223 KIIRFIKFLIFVPSLN*ILRIHILKPPTYFKLFISLFNCLKKNKLFSSHSRFGNTFI 393
           K+IRF+    F+     +++       T+F++F+SLF  L+   LF+    F N +I
Sbjct: 63  KLIRFLNIKEFLDKFEHLVKFLDFNKLTFFRIFVSLFQLLQITHLFACCFVFYNIYI 119


>UniRef50_Q22B76 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1444

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 23/85 (27%), Positives = 45/85 (52%)
 Frame = +1

Query: 160  KLHVLNQI*NT*IIFEFLSKNKIIRFIKFLIFVPSLN*ILRIHILKPPTYFKLFISLFNC 339
            ++ V+NQI +   I ++ +KN     ++ +I++PS+   L I I K P+  +  +   N 
Sbjct: 797  QIGVVNQIIHEDGIVQYFNKNVNYSNLQNIIYLPSILKNLAIDITKQPSIQQYLLPKIN- 855

Query: 340  LKKNKLFSSHSRFGNTFILNLILVN 414
             K++K ++      N  ILN + +N
Sbjct: 856  -KESKFWNGQFLVENLIILNKLKIN 879


>UniRef50_A0Q261 Cluster: Transglutaminase-like enzyme, putative
           cysteine protease; n=1; Clostridium novyi NT|Rep:
           Transglutaminase-like enzyme, putative cysteine protease
           - Clostridium novyi (strain NT)
          Length = 251

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 478 TIIVKYKSCLKKKD*RLELMKQLQQYSVSRE 570
           TI   Y SCLK K+  L ++K   QY VS+E
Sbjct: 220 TIDTTYDSCLKNKNLSLSMIKDSNQYKVSKE 250


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,413,676
Number of Sequences: 1657284
Number of extensions: 10070840
Number of successful extensions: 21266
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21259
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)