Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120322.Seq
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    31   0.20 
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    26   4.4  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   7.7  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 250  IFVPSLN*ILRIHILKPPTYFKLFISLFNCLKKNKLFSSHSRFGNTFILNLILVNKVK 423
            + VP L  +L ++I K   Y   F + F   K+N  F  H   G   + N    NK+K
Sbjct: 1076 LIVPLLTGVLAVYIFKKKFYHVKF-NAFGTSKQNLHFRQHDVLGMKNLFNFSCSNKIK 1132


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 434 HQTYFTLLTNIRLSIKVFPNLECDENSLFFFKQLNSEINSLKYV 303
           H T   L  NIR+  +V P L   E++   F   NSE ++++ V
Sbjct: 464 HNTIQELKGNIRVFCRVRPPLGDGESAQIAFPDQNSEASTIEIV 507


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 128 LWQCFHSIQSIWITT*KQYNIILVKMQVTFVI 33
           +WQC H++ S +  T  QY    +  Q T  I
Sbjct: 703 IWQCDHNVVSKFDGTISQYKKFCLSQQPTMTI 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,617
Number of Sequences: 5004
Number of extensions: 49493
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)