Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120322.Seq
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26942| Best HMM Match : TNFR_c6 (HMM E-Value=0.26)                  29   4.6  
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)         28   8.1  
SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)                28   8.1  

>SB_26942| Best HMM Match : TNFR_c6 (HMM E-Value=0.26)
          Length = 327

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +1

Query: 40  KVTCILTNIILYCFYVVIQIDWIE*KHCQRIL---RRNGYKILKLHVLNQI*N 189
           K+  I+T  +L  F+V++   W++ +  +++L   RR  Y++   H++ ++ N
Sbjct: 181 KIAFIVTCCLLVVFFVIVVTCWVKPRLRRKVLSRCRRTLYRLRSRHLMQRVVN 233


>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
          Length = 1224

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 129 NFEAKRLQNFKTSCIESNIEYLNYIRILIQKQNYTF 236
           +F A  +  FKT   E  +++ N+I+    KQ Y +
Sbjct: 15  SFVAAEIPQFKTGTFEQTVDHFNFIQSGTFKQRYLY 50


>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
          Length = 746

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 105 PIYLDHYVKTVQYYIS*NASHFCDLN 28
           P++ D Y KT  Y  +  +SH CDLN
Sbjct: 506 PLFFDRY-KTNVYLFTLESSHVCDLN 530


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,970,407
Number of Sequences: 59808
Number of extensions: 296747
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)