Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120322.Seq
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    29   3.1  
U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical pr...    29   4.1  

>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 163 VLKFCSRFASKFFGSVFIQSNLFGSLRKNSTIL 65
           +LK  S +++K+F  VF     FGS+RKN  +L
Sbjct: 270 ILKKKSEYSTKYF-CVFCGQRTFGSIRKNFAVL 301


>U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical protein
            F56F10.4 protein.
          Length = 958

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/77 (28%), Positives = 42/77 (54%)
 Frame = +1

Query: 85   VVIQIDWIE*KHCQRILRRNGYKILKLHVLNQI*NT*IIFEFLSKNKIIRFIKFLIFVPS 264
            VVI  + +   +CQ +++R+ YKI  L  L +I N  ++   L+K     F  F++ V +
Sbjct: 834  VVITEEQLRIYNCQPMVKRDSYKITALEGL-KIKNG-MVARILNKKNSNNFESFVVLVAN 891

Query: 265  LN*ILRIHILKPPTYFK 315
             +  LR+H ++  + F+
Sbjct: 892  -DGSLRVHSVQKASSFE 907


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,580,758
Number of Sequences: 27780
Number of extensions: 258230
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)