Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120322.Seq
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27220.1 68414.m03315 paired amphipathic helix repeat-contain...    28   5.0  
At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138...    28   6.6  
At3g25180.1 68416.m03144 cytochrome P450 family protein similar ...    28   6.6  

>At1g27220.1 68414.m03315 paired amphipathic helix repeat-containing
           protein similar to transcriptional repressor SIN3B [Mus
           musculus] GI:2921547; contains Pfam profile PF02671:
           Paired amphipathic helix repeat
          Length = 184

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 87  SDPNRLD*MKTLPKNFEAKRLQNFKTSCIESNIEYLNYIRILIQKQN 227
           +DP++ D    + KNF+A+++   + +CIE   E L   R LI   N
Sbjct: 28  NDPDKYDDFMAIMKNFKARKID--RNTCIEEVKELLKGHRDLISGFN 72


>At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 677

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +3

Query: 63  YNIVLFLRSDPNRLD*MKTLPKNFE----AKRLQNFKTSCIESNIEYLNYIRILIQKQNY 230
           YN   F+ +  N +  +KTLPKN +     K++ +FK S   S   YL+++  ++ K + 
Sbjct: 158 YNEEHFMATIANDVRVVKTLPKNLKWARRKKQIPSFKVSYGSSPYYYLHHVLPVLIKHSV 217

Query: 231 TFY*ISH 251
               + H
Sbjct: 218 VELVVPH 224


>At3g25180.1 68416.m03144 cytochrome P450 family protein similar to
           cytochrome P450 monooxygenase GB:AAC49188 [Pisum
           sativum]; contains Pfam profile: PF00067 cytochrome P450
          Length = 515

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 123 PKNFEAKRLQNFKTSCIESNIEYLNY 200
           PK F+ +R    K+ C +SN EY+ +
Sbjct: 420 PKTFKPERFMEDKSQCEKSNFEYIPF 445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,215,597
Number of Sequences: 28952
Number of extensions: 218381
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)