Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120321.Seq
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...    87   2e-18
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    29   1.0  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   3.2  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   3.2  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   5.5  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    26   7.3  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   7.3  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   9.7  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    25   9.7  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   9.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   9.7  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 37/55 (67%), Positives = 46/55 (83%)
 Frame = +2

Query: 257 YSDANKAKGITWNDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 421
           Y++AN+ KGITW+++TLF YLENPKKYIPGTKM FAG KK  +R ++I YLK AT
Sbjct: 53  YTEANRDKGITWDEETLFAYLENPKKYIPGTKMAFAGFKKPADRNNVITYLKKAT 107



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 32/46 (69%), Positives = 36/46 (78%)
 Frame = +3

Query: 117 GNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGF 254
           G+ + G  +F  RCAQCHTVE GG +KVGPNLHG FGRKTGQA GF
Sbjct: 6   GDEKKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGF 51


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 357 YLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 491
           +L   +R  S+++ +  SNLL  N  +++N   SIF +    Y L
Sbjct: 326 FLQSKKRPQSIMSYMGHSNLLERNLALMKNENGSIFSSAGDDYVL 370


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 354 WYLLDSRRQMSVLTL--LPISNLLPSNFKVIENSIRSIFHNISGIYFLFSPISISVMYSA 527
           WY      Q++  T+  L +  + P    ++E  +++ F   S   FLF  +  +++ SA
Sbjct: 89  WYSFAFTVQITFFTVIALQVKRVAPGAHTIVE-IVKARFGQASHAVFLFYALGTNIIVSA 147

Query: 528 MLQL 539
           ML L
Sbjct: 148 MLLL 151


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 251 IPYSDANKAKGITWNDDTLFEYLENPKKYIPG-TKMVFAGLKKANE 385
           +P+   +    +T+ +  L + L  PKKY P  +     G KKAN+
Sbjct: 197 LPFKTNSLNCDVTYEEGPLTKKLRGPKKYKPSHSSWDIYGFKKANQ 242


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -2

Query: 402  AIRSARSFAFLSPAN--TILVPGMYFLGFSRYSKRVSSFHVMPL--ALLASEYGILQPGQ 235
            AI S +S  F S A   T L+  + F  +     R   ++++      +A  +GI Q GQ
Sbjct: 1015 AIASLKSGLFFSAAQGVTFLINALTFW-YGSTLMRKGEYNIVQFYTCFIAIVFGIQQAGQ 1073

Query: 234  FFG 226
            FFG
Sbjct: 1074 FFG 1076


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +3

Query: 423 SNFKVIENSIRSIFHNISGIYFLFSPISISVMYSAMLQLHYNIKVFVSSKSQHNHLQLLF 602
           +NF   ENS + ++   +G+YF F   S     + +  +H+ +++  S       L L+F
Sbjct: 48  ANFLEWENS-KLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIF 106


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 405 ISNLLPSNFKVIENSIRSIFHNISGIYFL 491
           +S+L  + F+ I+N  +SI++   GI+F+
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFI 193


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 109 YLQETLKMERKFLYNDVPSATLLKLVANTK*DRIYMDSLAEKLARLQDSILRCQ 270
           YLQ+  +   KFL  +  +   L        + +  + LAE    +Q +ILR Q
Sbjct: 826 YLQQLTQYSEKFLNKESENTVGLLNAPGENIEELVDNQLAETAQAIQQAILRLQ 879


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 224 WPKNWPGCRIPYSDANKAKGITWNDDTLFEYL-ENPKKYIP 343
           W      CR  + D N  + I W D+ +  ++ EN   ++P
Sbjct: 81  WSNTVNSCRRQHPDENGWQFILWTDEKIMSFMNENYSWFMP 121


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 727 FCEKTITKLTRSINNLTFNHSQHCQESINHTIHYVPGTY 611
           F + T+  L      L   HS HC+ +    + ++PGT+
Sbjct: 657 FSKDTLFILNVESPCLMLQHSYHCKPNSKLNVFWMPGTH 695


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 208 FGPTLCLPPASTVWHWAHRCTKIFFP 131
           +GP L + PAST+ +W    T+ F P
Sbjct: 891 WGPFLVIAPASTLHNWQQEITR-FVP 915


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,494,928
Number of Sequences: 5004
Number of extensions: 78371
Number of successful extensions: 215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)