Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120321.Seq
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760     86   3e-17
01_06_1583 + 38436958-38437069,38438167-38438300,38438542-384386...    64   1e-10
08_02_0636 + 19567654-19568859                                         29   5.8  
04_01_0408 - 5393354-5393659,5393974-5394219,5394442-5394583,539...    29   5.8  
02_05_0956 - 33064104-33066425                                         29   5.8  
02_04_0300 + 21784634-21784691,21784784-21784893,21787486-217877...    29   5.8  
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385     28   7.7  

>05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760
          Length = 112

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 38/55 (69%), Positives = 44/55 (80%)
 Frame = +2

Query: 257 YSDANKAKGITWNDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 421
           YS ANK   + W ++TL++YL NPKKYIPGTKMVF GLKK  ERADLI+YLK AT
Sbjct: 57  YSTANKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEAT 111



 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 27/48 (56%), Positives = 35/48 (72%)
 Frame = +3

Query: 111 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGF 254
           P GN + G+KIF  +CAQCHTV+ G  HK GPNL+G FGR++G   G+
Sbjct: 8   PPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGY 55


>01_06_1583 +
           38436958-38437069,38438167-38438300,38438542-38438608,
           38438900-38438937,38439302-38439391
          Length = 146

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 28/56 (50%), Positives = 36/56 (64%)
 Frame = +3

Query: 111 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFHTPMPIKL 278
           P G+A  G+KIF  +CA CH V+    HK GPNL+G FGR++G A GF  P   K+
Sbjct: 8   PPGDAAAGEKIFRTKCAYCHAVDKAAGHKHGPNLNGLFGRQSGTAPGFSYPSGDKI 63



 Score = 39.5 bits (88), Expect(2) = 2e-06
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +2

Query: 332 KYIPGTKMVFAGLKKANERADLIAYLKSAT 421
           KY P  KM F GLK+  +RADLIAYLK+AT
Sbjct: 117 KYTPA-KMGFNGLKQPQDRADLIAYLKNAT 145



 Score = 29.9 bits (64), Expect(2) = 2e-06
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 257 YSDANKAKGITWNDDTLFEYLENPKKY 337
           Y   +K   + W ++TL++YL  PKK+
Sbjct: 57  YPSGDKIVPVIWEENTLYDYLLTPKKH 83


>08_02_0636 + 19567654-19568859
          Length = 401

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 328 QEIHPWNQDGIC-WTQEGK 381
           QE+ PW++DG+C W  E K
Sbjct: 358 QEVFPWSRDGLCPWKYETK 376


>04_01_0408 -
           5393354-5393659,5393974-5394219,5394442-5394583,
           5394981-5395076,5395153-5395265,5395345-5395559,
           5395645-5395742,5395815-5395935,5396020-5396240,
           5396625-5396805,5396906-5397188,5397346-5397395,
           5398565-5398805
          Length = 770

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 394 VSTLICLLESSKYHLGSRDVFLGILKIFKE-SVVIPCNALSFIGIGVWNPA 245
           +STL C++   K+++GS  +  G+  I K  S+VI     + IG  +  PA
Sbjct: 170 LSTLACIIALEKWNVGSEQIRRGLHFIAKNFSIVIDDQIAAPIGFNLTFPA 220


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = -2

Query: 366 PANTILVPGMYFLGFSRYSKRVSSFHVMPLALLASEYG--ILQPGQFFGQRIHVDSVLLC 193
           PAN IL  G  ++G S YS R  +  ++PL + + + G  + +PG+   + I +  ++LC
Sbjct: 362 PANIILGNGETYVGTSLYSGRNIAASLIPL-VYSGDAGSRLCEPGK-LSRNIVIGKIVLC 419


>02_04_0300 +
           21784634-21784691,21784784-21784893,21787486-21787771,
           21788292-21788472,21788978-21789195,21789511-21789631,
           21789703-21789800,21789894-21790105,21790199-21790311,
           21790404-21790499,21790626-21790841,21790958-21791099,
           21791280-21791525,21792078-21792389
          Length = 802

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 391 STLICLLESSKYHLGSRDVFLGILKIFKE-SVVIPCNALSFIGIGVWNPA 245
           STL C+L  +K+++G   +  G+  I +  S+ +   A++ IG G+  PA
Sbjct: 131 STLACVLALNKWNVGREHIRRGLSFIGRNFSIAMDDQAVAPIGFGITFPA 180


>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
          Length = 157

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 208 FG-PTLCLPPASTVWHWA 158
           FG PTLCLPP +T W  A
Sbjct: 21  FGMPTLCLPPIATYWSHA 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,908,596
Number of Sequences: 37544
Number of extensions: 453884
Number of successful extensions: 1082
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)