Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120321.Seq
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-8|AAB92035.1|  111|Caenorhabditis elegans Hypothetical ...    90   2e-18
Z74046-2|CAA98555.1|  123|Caenorhabditis elegans Hypothetical pr...    85   4e-17
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    29   4.0  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    29   4.0  
U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AL021567-3|CAA16509.2|  650|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    28   9.1  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U52070-1|AAD11527.1|   67|Caenorhabditis elegans dauer-upregulat...    28   9.1  
U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    28   9.1  

>AF038611-8|AAB92035.1|  111|Caenorhabditis elegans Hypothetical
           protein E04A4.7 protein.
          Length = 111

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 40/52 (76%), Positives = 45/52 (86%)
 Frame = +2

Query: 257 YSDANKAKGITWNDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLK 412
           YS ANK KG+ W  +TLFEYL NPKKYIPGTKMVFAGLKKA+ERADLI Y++
Sbjct: 53  YSAANKNKGVVWTRETLFEYLLNPKKYIPGTKMVFAGLKKADERADLIKYIE 104



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = +3

Query: 108 VPAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGF 254
           +PAG+ E GKK++ QRC QCH V++    K GP LHG  GR +G  +GF
Sbjct: 4   IPAGDYEKGKKVYKQRCLQCHVVDSTAT-KTGPTLHGVIGRTSGTVSGF 51


>Z74046-2|CAA98555.1|  123|Caenorhabditis elegans Hypothetical
           protein ZC116.2 protein.
          Length = 123

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 37/52 (71%), Positives = 45/52 (86%)
 Frame = +2

Query: 257 YSDANKAKGITWNDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLK 412
           YS ANK KG+ W+  TLF+YL +PKKYIPGTKMVFAGLKKA+ERADLI +++
Sbjct: 63  YSAANKNKGVVWDRQTLFDYLADPKKYIPGTKMVFAGLKKADERADLIKFIE 114



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/49 (55%), Positives = 34/49 (69%)
 Frame = +3

Query: 108 VPAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGF 254
           +P G+ E GKKIF QRC QCH V +  + K GP L+G  GR++GQ AGF
Sbjct: 14  IPEGDNEKGKKIFKQRCEQCHVVNS-LQTKTGPTLNGVIGRQSGQVAGF 61


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = -1

Query: 358 YHLGSRDVF-LGILKIFKESVVI-----PCNALSFIGIGVWNPAAW 239
           Y  GS++VF LG +   K+ VV+     PC +++F     W+P  W
Sbjct: 156 YRCGSKNVFNLGFIPGKKDQVVVIICRTPCASIAFQNDDNWSPEDW 201


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = -1

Query: 358 YHLGSRDVF-LGILKIFKESVVI-----PCNALSFIGIGVWNPAAW 239
           Y  GS++VF LG +   K+ VV+     PC +++F     W+P  W
Sbjct: 156 YRCGSKNVFNLGFIPGKKDQVVVIICRTPCASIAFQNDDNWSPEDW 201


>U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical
           protein F41C3.6 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 387 VLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 491
           +L  LP  N      + ++N ++SI HNI   YFL
Sbjct: 10  LLLFLPQENRYFVELRSLKNLLKSILHNIENDYFL 44


>AL021567-3|CAA16509.2|  650|Caenorhabditis elegans Hypothetical
           protein F21A10.4 protein.
          Length = 650

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 426 NFKVIENSIRSIFHNISGIYFLFS-PISISVMYSAMLQL--HYNIKVFVSSKSQHNH 587
           N ++ E +I    H I  ++  F+ P SI + Y  +LQ+  HY +++ +     HNH
Sbjct: 529 NVRIFEENIHRKDH-IHVMHIPFNIPPSIEICYWNVLQIEYHYEVEITLEGGHTHNH 584


>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 478 PEMLWKMLLM-EFSITLKLLGSRFEIGNKVSTLICLLESSKYHLGSRDVFLGILKIFKE 305
           PEM WK     +  I+  + GS FE+  K   L     SS   L S+  ++ ++ IFK+
Sbjct: 805 PEMAWKNFASPQDEISFLVEGSTFEMPEKYIQLYRGNSSSLIVLDSKMHYIRVINIFKK 863


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 478 PEMLWKMLLM-EFSITLKLLGSRFEIGNKVSTLICLLESSKYHLGSRDVFLGILKIFKE 305
           PEM WK     +  I+  + GS FE+  K   L     SS   L S+  ++ ++ IFK+
Sbjct: 805 PEMAWKNFASPQDEISFLVEGSTFEMPEKYIQLYRGNSSSLIVLDSKMHYIRVINIFKK 863


>U52070-1|AAD11527.1|   67|Caenorhabditis elegans dauer-upregulated
           gene protein.
          Length = 67

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 127 KMERKFLYNDVPSATLLKLVANTK*DRIYMDS 222
           + E+  + NDVPS  LL++V     DRI ++S
Sbjct: 19  RKEQMMVQNDVPSPPLLEVVRPRSRDRIMLES 50


>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 581 QSFAVVVCEYICTWYIMYCVIY 646
           +S  VV+  Y+CTW++   VI+
Sbjct: 210 KSMIVVISLYVCTWFLALLVIF 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,231,501
Number of Sequences: 27780
Number of extensions: 438555
Number of successful extensions: 1131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)