Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120321.Seq
         (814 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10040.1 68417.m01641 cytochrome c, putative similar to cytoc...    85   5e-17
At1g22840.1 68414.m02852 cytochrome c, putative similar to cytoc...    84   9e-17
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    32   0.52 
At3g04960.1 68416.m00538 expressed protein low similarity to SP|...    30   2.1  
At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin; gl...    29   4.9  
At4g08040.1 68417.m01294 1-aminocyclopropane-1-carboxylate synth...    28   6.4  
At1g78610.1 68414.m09161 mechanosensitive ion channel domain-con...    28   6.4  
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont...    28   8.5  

>At4g10040.1 68417.m01641 cytochrome c, putative similar to
           cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
          Length = 112

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 37/55 (67%), Positives = 43/55 (78%)
 Frame = +2

Query: 257 YSDANKAKGITWNDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 421
           YS ANK+  + W + TL++YL NPKKYIPGTKMVF GLKK  +RADLIAYLK  T
Sbjct: 57  YSAANKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGT 111



 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 28/48 (58%), Positives = 35/48 (72%)
 Frame = +3

Query: 111 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGF 254
           P GN + G+KIF  +CAQCHTVE G  HK GPNL+G FGR++G   G+
Sbjct: 8   PPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 55


>At1g22840.1 68414.m02852 cytochrome c, putative similar to
           cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051
          Length = 114

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 37/55 (67%), Positives = 43/55 (78%)
 Frame = +2

Query: 257 YSDANKAKGITWNDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 421
           YS ANK K + W +  L++YL NPKKYIPGTKMVF GLKK  +RADLIAYLK +T
Sbjct: 57  YSAANKNKAVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111



 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 31/48 (64%), Positives = 38/48 (79%)
 Frame = +3

Query: 111 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGF 254
           P GNA+ G+KIF  +CAQCHTVEAG  HK GPNL+G FGR++G  AG+
Sbjct: 8   PPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGY 55


>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
 Frame = +3

Query: 399 LPISNLLPSNFKVIENSIRSIFH-NISGIYFLFSPISISVMYSAMLQLHYNIKVFVSSKS 575
           LPI + + + F VI N +RS FH    G+  L+  +S+S++Y  ++ LH    +++ S +
Sbjct: 73  LPILSFVFAVFTVIANGVRSFFHLRAKGMAILW--LSMSLIY--LIYLHGACVIYILSIA 128

Query: 576 QHNHLQL-LFVNT-YVP 620
             N L + +F  T Y P
Sbjct: 129 TANFLLVKVFARTSYFP 145


>At3g04960.1 68416.m00538 expressed protein low similarity to
           SP|P32380 NUF1 protein (Spindle poly body spacer protein
           SPC110) {Saccharomyces cerevisiae}
          Length = 556

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 131 WKENFCTTMCPVPHC*SWWQTQSRTESTWILWPKNWPGCRIPYSDANKAKGITW 292
           W E+  TT  P+P C  +   +S T S  +   + +   R  Y   N  KG TW
Sbjct: 379 WLESLQTTEEPIPACGRFEHGKSETSSHLMFSHEMYHTIRGQYVTINPRKGETW 432


>At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin;
           glycine-rich protein 17 (GRP17) PMID:11431566; function:
           pollen recognition (PMID:10655594)
          Length = 543

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 183 GGKHKVGPNLHGFFGRKTGQAAG 251
           GGKHK+G   H F G K G   G
Sbjct: 517 GGKHKIGGGKHKFGGGKHGGGGG 539



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 180 AGGKHKVGPNLHGFFGRKTGQAAG 251
           +G KHK+G   HG  G K G+  G
Sbjct: 415 SGSKHKIGGGKHGGLGGKFGKKRG 438


>At4g08040.1 68417.m01294 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           ACC synthase from Malus sylvestris [SP|P37821], Solanum
           tuberosum [GI:520914]
          Length = 460

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 381 FAFLSPANTILVPGMYFLGFSRYSKRVSSFHVMPLALLAS 262
           F   +P +  L+P  Y+ GF R  K  +   ++P+  ++S
Sbjct: 127 FCLANPGDAFLIPAPYYPGFDRDLKWRTGVEIVPIHCVSS 166


>At1g78610.1 68414.m09161 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 856

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 315 ILRIPRNTSLEPRWYLLDSR-RQMSVLTLLPISNLLPSNF 431
           I +I R   +E R Y LD   R +   T LP+S+ LP N+
Sbjct: 809 IAKICRELDIEYRLYPLDINVRNLPTSTALPVSDRLPPNW 848


>At2g20210.1 68415.m02363 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 604

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 210 DSVLLCVCHQLQQCGTGHIVVQKFSFHFQRF 118
           D++L  +CH+       + V ++ SFHFQ F
Sbjct: 145 DNILRYICHEEHIMTCQNCVCKELSFHFQTF 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,636,245
Number of Sequences: 28952
Number of extensions: 388116
Number of successful extensions: 1086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)