Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120319.Seq
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 30 0.43
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 30 0.43
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 30 0.43
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 30 0.43
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 30 0.43
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 30 0.43
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 30 0.43
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 30 0.43
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 30 0.43
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 30 0.43
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 30 0.43
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 30 0.43
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 29 0.56
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 28 1.7
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 2.3
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 27 3.0
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 27 3.0
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 3.0
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 27 4.0
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 26 5.2
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 26 6.9
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 25 9.2
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 9.2
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 9.2
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 25 9.2
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +3
Query: 258 VAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQR 416
+ +TE + K E F+ +I D Q+ + T+++ LN +E +Q
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL 891
Query: 417 KDEMM-HKKDELLQVKDTQVSNLIAK 491
KD ++ + KD++L DTQ++ I K
Sbjct: 892 KDGLLINSKDQILLPNDTQLTRTIIK 917
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +3
Query: 258 VAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQR 416
+ +TE + K E F+ +I D Q+ + T+++ LN +E +Q
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL 891
Query: 417 KDEMM-HKKDELLQVKDTQVSNLIAK 491
KD ++ + KD++L DTQ++ I K
Sbjct: 892 KDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +3
Query: 258 VAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQR 416
+ +TE + K E F+ +I D Q+ + T+++ LN +E +Q
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL 891
Query: 417 KDEMM-HKKDELLQVKDTQVSNLIAK 491
KD ++ + KD++L DTQ++ I K
Sbjct: 892 KDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +3
Query: 258 VAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQR 416
+ +TE + K E F+ +I D Q+ + T+++ LN +E +Q
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL 891
Query: 417 KDEMM-HKKDELLQVKDTQVSNLIAK 491
KD ++ + KD++L DTQ++ I K
Sbjct: 892 KDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +3
Query: 258 VAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQR 416
+ +TE + K E F+ +I D Q+ + T+++ LN +E +Q
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL 891
Query: 417 KDEMM-HKKDELLQVKDTQVSNLIAK 491
KD ++ + KD++L DTQ++ I K
Sbjct: 892 KDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +3
Query: 258 VAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQR 416
+ +TE + K E F+ +I D Q+ + T+++ LN +E +Q
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL 891
Query: 417 KDEMM-HKKDELLQVKDTQVSNLIAK 491
KD ++ + KD++L DTQ++ I K
Sbjct: 892 KDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +3
Query: 258 VAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQR 416
+ +TE + K E F+ +I D Q+ + T+++ LN +E +Q
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL 891
Query: 417 KDEMM-HKKDELLQVKDTQVSNLIAK 491
KD ++ + KD++L DTQ++ I K
Sbjct: 892 KDGLLINSKDQILLPNDTQLTRTIIK 917
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +3
Query: 258 VAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQR 416
+ +TE + K E F+ +I D Q+ + T+++ LN +E +Q
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL 891
Query: 417 KDEMM-HKKDELLQVKDTQVSNLIAK 491
KD ++ + KD++L DTQ++ I K
Sbjct: 892 KDGLLINSKDQILLPNDTQLTRTIIK 917
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +3
Query: 258 VAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQR 416
+ +TE + K E F+ +I D Q+ + T+++ LN +E +Q
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL 891
Query: 417 KDEMM-HKKDELLQVKDTQVSNLIAK 491
KD ++ + KD++L DTQ++ I K
Sbjct: 892 KDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +3
Query: 258 VAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQR 416
+ +TE + K E F+ +I D Q+ + T+++ LN +E +Q
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL 891
Query: 417 KDEMM-HKKDELLQVKDTQVSNLIAK 491
KD ++ + KD++L DTQ++ I K
Sbjct: 892 KDGLLINSKDQILLPNDTQLTRTIIK 917
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 29.9 bits (64), Expect = 0.43
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 86 KLPYAIELQEWLLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQGGG 262
+L ++ +LE ++ Q+ G+ DPA+ Q +N + +L+A E +AL GG
Sbjct: 258 QLRQIVQQNPQMLETILQQI---GQGDPALAQAITQNPEAFLQLLAEGAEGESALPSGG 313
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +3
Query: 258 VAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQR 416
+ +TE + K E F+ +I D Q+ + T+++ LN +E +Q
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL 891
Query: 417 KDEMM-HKKDELLQVKDTQVSNLIAK 491
KD ++ + KD++L DTQ++ I K
Sbjct: 892 KDGLLINSKDQILLPNDTQLTRTIIK 917
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 29.5 bits (63), Expect = 0.56
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 321 KDKQIEAKDLQ-VTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAK 491
++ Q ++D Q +T+ TD+ Q+ + DE KK ELL+ K+ + K
Sbjct: 274 RNHQFHSRDSQPITQRHTDIESRLQKMQDNAKELDESRRKKIELLEKKERDEEQFLEK 331
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 666 IFSTTMLAASMLRLCFWLSTYVFWPVIAVNVV 571
I TM+ LR +WLST +F P++ V+
Sbjct: 702 IMQLTMMGLMSLRKAYWLSTVIF-PLLCFTVI 732
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 44 LITKSGVIQLIMKSKLPYAIELQEWLL 124
L+ K GV+ L+ K KLP+++ ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 280 SSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLL 182
+ S F LQR+C LGK + FS + FL+
Sbjct: 302 AESTFLPAVLQRICELGKESSLFSISMVKSFLV 334
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = -3
Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
+SL ICL L ++ + F+ + CA+ + +C+ +++ +L+ F FNC
Sbjct: 98 QSLEVICLLLAYKIKYPENFFILRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNC 157
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 493 ILAIKLETCVSLTCNNSSFL-CIISSFLCIVS*NPVYMRLRSVITRVTCKSLASICLSLI 317
I I+LE V+ C N + + C S+ CIV R + I+R TC + + +++
Sbjct: 93 IKTIELEATVNCLCVNENLVVCGCSNSSCIVYSWNAEQRNLTEISRFTCSEIIPLEFAIV 152
Query: 316 AMMRSI 299
+ I
Sbjct: 153 KLDHGI 158
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 172 CGVVLARA*HLRNYFF*KPFL*FYGVRKLAL 80
CG++L A L YFF L +G+RK+AL
Sbjct: 86 CGLILTLA--LEVYFFSTALLKLFGLRKIAL 114
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 666 IFSTTMLAASMLRLCFWLSTYVFWPVIAVNVVPSR 562
+F+ T+ A ++ LCF+ Y +PV A+ + R
Sbjct: 316 LFTITLSIALLVTLCFYDVKYARYPVFALKSLKDR 350
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 626 KRNIDAANIVVENIRPNPTVDW 691
KR + AN EN++P P DW
Sbjct: 288 KRKAENANRAAENLQPLPLDDW 309
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 125 EEVIPQVLCTGKYDPAIKQQEEKNKQL 205
+ V+ +++ GKY IK+Q +NKQL
Sbjct: 551 KRVLQRLIIEGKYTYYIKRQGTQNKQL 577
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 621 STNVTSTLPTLWWRISG 671
STN TS LP+ W ++G
Sbjct: 180 STNTTSALPSSGWNVTG 196
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 155 GKYDPAIKQQEEKNKQLVTKLIATF 229
G+++ IKQQEE K L +K + F
Sbjct: 442 GEFENLIKQQEEAKKSLWSKRFSRF 466
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 762 LLLANQN*MFACYVYFVAESVALFQSTVGLGRIF 661
LLL+ + M + YF+ V L+ +++ LGRI+
Sbjct: 161 LLLSMSDSMSSISYYFLLSLVLLYIASISLGRIY 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,703
Number of Sequences: 5004
Number of extensions: 60446
Number of successful extensions: 231
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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