Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120319.Seq
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0893 + 22327485-22327671,22327756-22328627 33 0.19
02_05_1246 - 35226759-35226860,35227521-35227715,35227804-352283... 32 0.44
03_02_0491 + 8854438-8854657,8854897-8854942,8855268-8855307,885... 31 0.77
06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143 30 1.8
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 30 1.8
12_02_0913 + 24246217-24247557 29 3.1
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 29 3.1
06_03_0241 - 18607950-18608050,18608158-18608226,18608374-18608611 29 3.1
06_03_0239 - 18582930-18583030,18583137-18583205,18583338-18583590 29 3.1
04_03_0446 - 16012926-16013042,16013266-16013469 29 4.1
03_01_0196 + 1559190-1560395 29 4.1
06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739 29 5.4
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 28 7.2
02_02_0536 + 11304298-11304400,11304731-11305797,11306026-113064... 28 7.2
01_06_0117 + 26605186-26605443,26605540-26605583,26605659-266057... 28 7.2
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 7.2
12_01_0393 - 3100230-3100714,3100973-3101097,3101271-3101399,310... 28 9.5
04_01_0301 + 4016588-4016627,4016715-4018837 28 9.5
01_06_0868 - 32587618-32587875,32588239-32588318,32588518-325885... 28 9.5
>08_02_0893 + 22327485-22327671,22327756-22328627
Length = 352
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = -3
Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
+S+ +ICL L ++ ++ FL + CA+ + +C+ +FS +L+ LF FNC
Sbjct: 99 QSIETICLLLAYKIKYPDNFFLLRGNHECASINRIYGFYDECKRRFSVRLWKLFTDCFNC 158
Query: 169 GVVLA 155
V A
Sbjct: 159 LPVAA 163
>02_05_1246 -
35226759-35226860,35227521-35227715,35227804-35228363,
35229299-35229476
Length = 344
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -3
Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
+SL +ICL L ++ + FL + CA+ + +C+ +FS +L+ F FNC
Sbjct: 96 QSLETICLLLAYKIKYPENFFLLRGNHECASVNRIYGFYDECKRRFSVKLWKTFTDCFNC 155
Query: 169 GVVLA 155
V A
Sbjct: 156 LPVAA 160
>03_02_0491 +
8854438-8854657,8854897-8854942,8855268-8855307,
8856025-8856090,8856237-8856318,8857036-8857595,
8857681-8857771,8858300-8858316
Length = 373
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = -3
Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
+SL +ICL L ++ + FL + CA+ + +C+ +F+ +L+ +F FNC
Sbjct: 188 QSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTDCFNC 247
Query: 169 GVVLA 155
V A
Sbjct: 248 LPVAA 252
>06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143
Length = 339
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = -3
Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
+S+ +ICL L ++ + FL + CA+ + +C+ +F+ +++ +F FNC
Sbjct: 113 QSIETICLLLAYKIKYPENFFLLRGNHECASINRIYGFFDECKRRFNVRIWKVFTDCFNC 172
Query: 169 GVVLA 155
V A
Sbjct: 173 LPVAA 177
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +3
Query: 222 RHLPSTQTRCKVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQ 401
+ L R + + K E+ KK E ++ I + IEAKD+ + + + +
Sbjct: 1685 KELVEAGERNEELIMKIEDTDKKIEHLQNAIIKLEGDIEAKDISLEAAREENDTIRKSLA 1744
Query: 402 ETMQRKDEMMHK 437
E ++ +E++ K
Sbjct: 1745 EAQEKNEELLRK 1756
>12_02_0913 + 24246217-24247557
Length = 446
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 267 FAPPPCSAFVCSVNVAISLVTNCLFFSSCCLIAG 166
FAP PC+A +C+ N ++ C + C +IAG
Sbjct: 142 FAPVPCAARICAAN--DDIIHFCDLAAGCSVIAG 173
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 258 VAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHK 437
V ++ E KK E + I +D++I +DL+ R + + GF M+ KDE + +
Sbjct: 658 VFKRLNEQKKKNEKPDLISLFEDQKIMKQDLEEIRKRLYMLELKEGFH--MEEKDEPIQE 715
Query: 438 KDELLQ 455
D++++
Sbjct: 716 DDQVVE 721
>06_03_0241 - 18607950-18608050,18608158-18608226,18608374-18608611
Length = 135
Score = 29.5 bits (63), Expect = 3.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 715 CSRISGVVPIDGRIRPDILHHNV 647
CS++SG +DG+ +P +HH +
Sbjct: 53 CSKLSGCKIVDGKCKPPYIHHTL 75
>06_03_0239 - 18582930-18583030,18583137-18583205,18583338-18583590
Length = 140
Score = 29.5 bits (63), Expect = 3.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 715 CSRISGVVPIDGRIRPDILHHNV 647
CS++SG +DG+ +P +HH +
Sbjct: 58 CSKLSGCKIVDGKCKPPYIHHTL 80
>04_03_0446 - 16012926-16013042,16013266-16013469
Length = 106
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 514 GSIPRGQAQTSGAVRDARRHYVYGYYRPKDVRGKPKAQT 630
G +PRG + G + + RR G +R + G P ++
Sbjct: 22 GGVPRGAEVSGGGLEEERRRQAKGSWRWRQAEGSPAGRS 60
>03_01_0196 + 1559190-1560395
Length = 401
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 538 QTSGAVRDARR-HYVYGYYRPKDVRGKPKAQT*HRRCQHCGGE 663
Q+ +++A R H + Y+ PK +RG P A T GG+
Sbjct: 80 QSLAGIKNALRLHAILDYFDPKKIRGLPDADTMTDTLYQAGGD 122
>06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739
Length = 135
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 715 CSRISGVVPIDGRIRPDILHHNV 647
C +ISG +DG+ +P +HH +
Sbjct: 53 CCKISGCKIVDGKCKPPFIHHTL 75
>07_03_1424 -
26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = +3
Query: 351 QVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNL 482
+++ V + +MY + ++ R++E++H ++LLQ + T + +L
Sbjct: 797 EISLVKENAEKMYGHDEISVYRQNEILHSSEQLLQDELTHIKSL 840
>02_02_0536 +
11304298-11304400,11304731-11305797,11306026-11306416,
11307164-11308041
Length = 812
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = +3
Query: 258 VAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHK 437
V ++ +E KK E + + +D++I +DL+ R + + GF M+ KDE + +
Sbjct: 608 VFKRLDEQKKKNEKPDLMSLFEDQKIMKQDLEEIRKRLYMLELKEGFH--MEEKDEPIQE 665
Query: 438 KDELL 452
D+++
Sbjct: 666 DDQVV 670
>01_06_0117 +
26605186-26605443,26605540-26605583,26605659-26605737,
26605822-26605944,26606300-26606482,26606562-26606648,
26608149-26608255,26608387-26608474,26608805-26608885,
26608983-26609059,26609183-26609318,26609548-26609610,
26609983-26610563,26610816-26610933
Length = 674
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 536 RKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNP-TVDWNN 697
R +P + V R G TA+ + Y+ Q +R + ++E + PNP T +W N
Sbjct: 392 RINPSVDVIRWGLGSTAVRMAEDYIYGQHQRRRLAYFVELMEVLNPNPRTENWLN 446
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +3
Query: 303 ERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSN 479
E I+++ + IE K + ++L ++YTG ++ +K+E + D++ +KD + N
Sbjct: 498 ENSISLQVETIEDKTNFMPEKFSELEKVYTGCEKLNNKKEE-QEENDKINTLKDEKDHN 555
>12_01_0393 -
3100230-3100714,3100973-3101097,3101271-3101399,
3102480-3102508
Length = 255
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 568 RHYVYGYYRP-KDVRGKPKAQT*HRRC 645
+HY++G +RP KD+ G + Q H C
Sbjct: 99 KHYLWGLFRPRKDIVGVAEEQAAHAMC 125
>04_01_0301 + 4016588-4016627,4016715-4018837
Length = 720
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 300 IERIIAIKDKQIEAK--DLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELL 452
+E ++ + K+ AK + Q +M +L + F+E KD + K DELL
Sbjct: 163 MELVVLTEAKKAAAKACEAQNDEIMKELEDLKRKFEELQTNKDLVQAKNDELL 215
>01_06_0868 -
32587618-32587875,32588239-32588318,32588518-32588583,
32589896-32590523
Length = 343
Score = 27.9 bits (59), Expect = 9.5
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Frame = +3
Query: 165 TPQLNNRRKRTNSW*LN*LRHLPSTQTRCKVVAQ--KTEELFKKQEFIERIIAIKDKQIE 338
T +L R R W L+ L Q C+ + TEE ++Q + + +++ E
Sbjct: 178 TVRLRVVRHREKGWGLHAAEVLRRGQFVCEYAGELLTTEEARRRQGLYDELASVEISSKE 237
Query: 339 AKDLQVTRVMTDLNRM---------YTGFQETMQRKDEMMHKKDELLQVKDTQVSNLI 485
V VM DL RM + QE+ +DE K+D + + Q +NL+
Sbjct: 238 KSSPSVM-VMLDLGRMACRAFALGMHFPLQESGGDEDESFDKEDSWREWRTQQKNNLV 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,259,076
Number of Sequences: 37544
Number of extensions: 414304
Number of successful extensions: 1235
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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