Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120319.Seq
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)        36   0.028
SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_27299| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)              31   1.4  
SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)       29   3.2  
SB_16983| Best HMM Match : SNARE (HMM E-Value=1.9)                     29   3.2  
SB_22778| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_40387| Best HMM Match : GrpE (HMM E-Value=0)                        29   5.5  
SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)                  28   7.3  
SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_58057| Best HMM Match : RVT_1 (HMM E-Value=0.0085)                  28   9.7  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)
          Length = 311

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 23/99 (23%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
 Frame = +3

Query: 252 KVVAQKTEELFKKQEFIERIIAIKDKQIEAKDL--QVTRVMTDLNRMYTGFQETMQRKDE 425
           K + Q+  E+  ++  +ER  ++++ Q + KDL  Q  R   +L ++   ++E    KDE
Sbjct: 79  KQMEQRMAEIGVEKGNVER--SLEEVQSQNKDLMQQAERAKAELAKLSAKYEELEDEKDE 136

Query: 426 MMHKKDELLQVKDTQVSNLIAKMIDLSDARFNTPRTSAN 542
           M     + ++ K  ++ +L A  +++S+ ++   ++S N
Sbjct: 137 MQESLSDTIREKSREIRDLEAD-LEMSEQKYEDLKSSWN 174


>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/88 (23%), Positives = 41/88 (46%)
 Frame = +3

Query: 228 LPSTQTRCKVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQET 407
           L   +  CK + Q+  E    +     I +   K I AK  + T  +++L  M+T  +  
Sbjct: 292 LKEKEANCKKLEQQLAEAVDSKS----INSDSMKTITAKLTEATNRVSELQNMFTSMETQ 347

Query: 408 MQRKDEMMHKKDELLQVKDTQVSNLIAK 491
           +Q+  E   +KD   Q+K+ ++   +A+
Sbjct: 348 LQKSQERQVEKDN--QIKELELKLKLAQ 373


>SB_27299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +3

Query: 270 TEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKK--D 443
           TE+ F+K +FIE+ I IKD++     ++VTR    +N +    ++      + ++ K  +
Sbjct: 93  TEKGFEKYKFIEKRIKIKDEKDSVYQIKVTRHGPVMNTIIQHLKDEKPMAMQWIYTKLNN 152

Query: 444 ELLQV 458
           ELL++
Sbjct: 153 ELLEL 157


>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
          Length = 1452

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 375  LNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDARFNTPRTSA 539
            + R+  G  ET++R  E + KKD     KD++     +  I+  D  F    TS+
Sbjct: 1147 VGRVVGGGTETVERNKEPVKKKDSSKSSKDSKAKESASSSIEKKDTSFKKKVTSS 1201


>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = -3

Query: 379 LRSVITRVTCKSLASICLSLIAMMR--SINSCFLKSSSVFCATTLQRVCVLGKCRNQFSH 206
           L++ +T  TC+ L SI LSL  M+R  S    F K   +    ++    +  K   Q  +
Sbjct: 147 LKNQLTSPTCEYLHSIALSLQLMLRVESYKEAFFKLEGI---NSIVATLLRNKIGFQLQY 203

Query: 205 QL-FVLFLLLFN 173
           QL F L+LL F+
Sbjct: 204 QLIFTLWLLSFD 215


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 473 DLRVFNLQQLVFFVHHFIFSLHSFLKPGV--HAVEVGHHARHLQVFGLNLLVLN 318
           DL +  ++Q +F  HHF+F  H  L+      A E    A  L+    NL++LN
Sbjct: 638 DLDIPEVKQAIFATHHFVFQAHIVLEGAAIKLASEPCARAHGLKFDECNLVLLN 691


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/38 (36%), Positives = 27/38 (71%)
 Frame = +3

Query: 402  ETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDAR 515
            E+ ++ DE+M +KD+LL+ K   V++L  KM +++D +
Sbjct: 1618 ESEKKIDELMVQKDKLLKEKVDLVNSLHEKMSEMNDEK 1655


>SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)
          Length = 293

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = -3

Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
           +SL +ICL L   ++   + FL   +  CA+  +      +C+ +++ +L+  F   FNC
Sbjct: 99  QSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNC 158

Query: 169 GVVLA 155
             V A
Sbjct: 159 LPVAA 163


>SB_16983| Best HMM Match : SNARE (HMM E-Value=1.9)
          Length = 101

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +3

Query: 351 QVTRVMTDLNRMYTGFQETMQRKDEMMHKKDEL---LQVKDTQVSNL 482
           Q+ R +TDLN +   +QE ++ + ++ +K D+    L+VK  +V  L
Sbjct: 14  QLQRTITDLNDLTLRYQEVLKERRDLENKLDQAESDLEVKHKRVEEL 60


>SB_22778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +3

Query: 219 LRHLPSTQTRCKVVAQ-KTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTG 395
           LR + S++TR + + Q +TE    +    ERI ++   Q EAK++Q   +     RM   
Sbjct: 346 LREMESSKTRLEQLEQLETERQNARDSHYERIHSMHKLQDEAKEMQQKEIEAVRVRMLRE 405

Query: 396 FQETMQRKDEMMHKKDELLQVK 461
            +  +++  E   ++ + L+ K
Sbjct: 406 RELEIEKVQEKARREADNLERK 427


>SB_40387| Best HMM Match : GrpE (HMM E-Value=0)
          Length = 328

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 300 IERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHK 437
           +E  +A KDK IE +D  VT +     R     Q  +QR  +M+ +
Sbjct: 164 LEAKLAKKDKYIEERDKLVTELEDKYKRSLAENQNVLQRSQKMVEE 209


>SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)
          Length = 1231

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/63 (17%), Positives = 36/63 (57%)
 Frame = +3

Query: 273  EELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELL 452
            +++ K+Q  +E+++  K+K+ + +  +  ++   L       +E +QR+ E + + +++ 
Sbjct: 970  KKIMKEQRELEKMLQQKEKERQVERQKQKQLQEQLQEQEKALRERLQRQQEELEEIEKVK 1029

Query: 453  QVK 461
            Q++
Sbjct: 1030 QLE 1032


>SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 436 LCIISSFLCIVS*NPVYMRLRSVIT 362
           L ++ SFLCI+  +P Y+ LR++ T
Sbjct: 40  LAVVYSFLCIIIVSPNYLTLRALYT 64


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/73 (21%), Positives = 35/73 (47%)
 Frame = +3

Query: 225  HLPSTQTRCKVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQE 404
            +L S + RC     +T +L+K+ +   + I   +++++     +T +M  L+      + 
Sbjct: 846  NLQSLEKRCNEKQTETLQLYKELDLKRQEIGEMEQRLQVALDDMTNMMIKLDTANAELEV 905

Query: 405  TMQRKDEMMHKKD 443
              ++  EM H KD
Sbjct: 906  KDKKLREMRHSKD 918


>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1931

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 98  AIELQEWLLEEVIPQVLCTGKYDPAI 175
           AI + +W L+ VIP+ LCT K +  I
Sbjct: 420 AIPVDQWNLDYVIPKPLCTTKNNKCI 445


>SB_58057| Best HMM Match : RVT_1 (HMM E-Value=0.0085)
          Length = 576

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 83  SKLPYAIELQEWLLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEHTNA 247
           +KLP     + + LE V+    C G Y   +   +EK ++    L +T+ + T A
Sbjct: 165 TKLPVGNPGKNFTLEAVVKIADCFGSYTTQVMATQEKCQEQNVDLYSTYVDLTKA 219


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +3

Query: 288  KQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDT 467
            K E IE +     K+IE+++ ++ ++  D+        ++MQ++DE+    D+ L V   
Sbjct: 913  KDELIENL----KKEIESQEKEIKKLRRDVLSAQNSLDQSMQKRDEL----DKALFVAKQ 964

Query: 468  QVSN 479
            Q+S+
Sbjct: 965  QLSD 968


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,699,990
Number of Sequences: 59808
Number of extensions: 492457
Number of successful extensions: 1441
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)