Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120319.Seq
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.79 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.3  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   7.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.7  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 444 ELLQVKDTQVSNLIAKMIDLSD 509
           +L  +K    SNL+AK IDLSD
Sbjct: 187 DLKHMKQEAGSNLVAKGIDLSD 208



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 535 LVRGVLNRASDKSIILAIKLETCVSLTCNN 446
           L+R V+N     ++ L +KL   + +   N
Sbjct: 48  LIRPVMNNTETLTVQLGLKLSQLIEMNLKN 77


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 506 GRAVQYPADKRKHPVLCV 559
           GRA+ +P DK   P+L V
Sbjct: 643 GRAMGFPLDKPVDPLLLV 660


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 506 GRAVQYPADKRKHPVLCV 559
           GRA+ +P DK   P+L V
Sbjct: 643 GRAMGFPLDKPVDPLLLV 660


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 342 KDLQVTRVMTDLNRMYTGFQETMQRK 419
           KDL    V++    MY G  + MQ++
Sbjct: 66  KDLYANTVLSGGTTMYPGIADRMQKE 91


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 628 FVLLAFHVRLLAGNSRKRSAVARHAQHRMFA 536
           F+L AF +  +   + KR   A+H ++ ++A
Sbjct: 312 FILSAFDMARIIQITPKRIQYAQHKENELYA 342


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 628 FVLLAFHVRLLAGNSRKRSAVARHAQHRMFA 536
           F+L AF +  +   + KR   A+H ++ ++A
Sbjct: 350 FILSAFDMARIIQITPKRIQYAQHKENELYA 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,849
Number of Sequences: 438
Number of extensions: 4299
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)