Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120319.Seq
(777 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25070.1 68418.m02971 expressed protein 44 1e-04
At1g33820.1 68414.m04185 hypothetical protein 33 0.21
At5g59160.2 68418.m07415 serine/threonine protein phosphatase PP... 32 0.37
At5g59160.1 68418.m07414 serine/threonine protein phosphatase PP... 32 0.37
At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP... 31 0.64
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 31 0.85
At4g13030.2 68417.m02034 expressed protein 31 0.85
At4g13030.1 68417.m02033 expressed protein 31 0.85
At2g39840.1 68415.m04893 serine/threonine protein phosphatase PP... 30 1.5
At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP... 29 2.6
At1g19650.1 68414.m02449 SEC14 cytosolic factor, putative / phos... 29 2.6
At1g15040.2 68414.m01798 glutamine amidotransferase-related 29 2.6
At5g18510.1 68418.m02185 hypothetical protein 29 4.5
At1g15040.1 68414.m01797 glutamine amidotransferase-related 29 4.5
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ... 28 6.0
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ... 28 6.0
At5g43380.2 68418.m05303 serine/threonine protein phosphatase PP... 28 6.0
At5g43380.1 68418.m05302 serine/threonine protein phosphatase PP... 28 6.0
At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2 tr... 28 6.0
At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2 tr... 28 6.0
At5g22040.1 68418.m02566 expressed protein 28 7.9
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 28 7.9
At3g05580.1 68416.m00619 serine/threonine protein phosphatase, p... 28 7.9
At2g29400.1 68415.m03573 serine/threonine protein phosphatase PP... 28 7.9
At1g77960.1 68414.m09085 hypothetical protein 28 7.9
At1g24560.1 68414.m03090 expressed protein 28 7.9
>At5g25070.1 68418.m02971 expressed protein
Length = 736
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/86 (25%), Positives = 44/86 (51%)
Frame = +3
Query: 252 KVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMM 431
+++ +K E L + E + ++ K+K+I+ D Q+ V +N + TGF+E D+M+
Sbjct: 380 EILQKKKEHLANELEELLALVKAKEKEIDENDSQIEAVEERINNVVTGFKELQTSMDKML 439
Query: 432 HKKDELLQVKDTQVSNLIAKMIDLSD 509
+ L D + +L K D+ +
Sbjct: 440 NDVQAGLTEVDKETEDLSRKKKDVDE 465
>At1g33820.1 68414.m04185 hypothetical protein
Length = 182
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/92 (26%), Positives = 43/92 (46%)
Frame = +3
Query: 219 LRHLPSTQTRCKVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGF 398
+ H+ TQT +V ++ E + +KD + KD Q ++ + M T F
Sbjct: 34 MTHIEDTQTMKMMVENALKQSAMAHE--REMSQLKDTLL-LKDTQTMNMVKQM--METAF 88
Query: 399 QETMQRKDEMMHKKDELLQVKDTQVSNLIAKM 494
+E + M + + LQ+KDTQ N++ +M
Sbjct: 89 KENAMVHERDMCQLKDTLQLKDTQTINMMTQM 120
>At5g59160.2 68418.m07415 serine/threonine protein phosphatase PP1
isozyme 2 (TOPP2) identical to SP|P48482
Serine/threonine protein phosphatase PP1 isozyme 2 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 312
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -3
Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
+SL +ICL L ++ + FL + CA+ + +C+ +FS +L+ +F FNC
Sbjct: 105 QSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKVFTDSFNC 164
Query: 169 GVVLA 155
V A
Sbjct: 165 LPVAA 169
>At5g59160.1 68418.m07414 serine/threonine protein phosphatase PP1
isozyme 2 (TOPP2) identical to SP|P48482
Serine/threonine protein phosphatase PP1 isozyme 2 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 312
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -3
Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
+SL +ICL L ++ + FL + CA+ + +C+ +FS +L+ +F FNC
Sbjct: 105 QSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKVFTDSFNC 164
Query: 169 GVVLA 155
V A
Sbjct: 165 LPVAA 169
>At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP1
isozyme 5 (TOPP5) / phosphoprotein phosphatase 1
identical to SP|P48485 Serine/threonine protein
phosphatase PP1 isozyme 5 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GI:166803
{Arabidopsis thaliana}
Length = 312
Score = 31.5 bits (68), Expect = 0.64
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = -3
Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
+SL +ICL L ++ + FL + CA+ + +C+ +F+ +L+ +F FNC
Sbjct: 105 QSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVKLWKVFTDTFNC 164
Query: 169 GVVLA 155
V A
Sbjct: 165 LPVAA 169
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +3
Query: 279 LFKKQEFIERI---IAIKDKQIEAKDLQVTRVMTDLNRMYTG---FQETMQRKDEMMHKK 440
L +K E +E +++K K ++ + + + T L +M +E ++ KDE++ KK
Sbjct: 20 LKQKNELVETPPSPVSVKGKSAKSFEQDLMEMQTMLEKMKIEKDKTEELLKEKDEILRKK 79
Query: 441 DELLQVKDTQVSNL 482
+E L+ +D + L
Sbjct: 80 EEELETRDAEQEKL 93
>At4g13030.2 68417.m02034 expressed protein
Length = 479
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 312 IAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMH-KKDELLQVKDTQVSNLIA 488
+ KD E + +TDL R +QE +Q D ++ K +L Q ++ +S
Sbjct: 30 LGFKDDVSEENFTNFSNHVTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPG 89
Query: 489 KMIDLSDARFNTPRTSA 539
D+ + +N P+T++
Sbjct: 90 SWSDVKLSDYNIPKTTS 106
>At4g13030.1 68417.m02033 expressed protein
Length = 481
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 312 IAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMH-KKDELLQVKDTQVSNLIA 488
+ KD E + +TDL R +QE +Q D ++ K +L Q ++ +S
Sbjct: 32 LGFKDDVSEENFTNFSNHVTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPG 91
Query: 489 KMIDLSDARFNTPRTSA 539
D+ + +N P+T++
Sbjct: 92 SWSDVKLSDYNIPKTTS 108
>At2g39840.1 68415.m04893 serine/threonine protein phosphatase PP1
isozyme 4 (TOPP4) / phosphoprotein phosphatase 1
identical to SP|P48484 Serine/threonine protein
phosphatase PP1 isozyme 4 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GI:166801
(Arabidopsis thaliana); contains a Ser/Thr protein
phosphatase signature (PDOC00115); contains a
metallo-phosphoesterase motif (QDOC50185)
Length = 321
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = -3
Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
+SL +ICL L ++ + FL + CA+ + +C+ +F+ +++ +F FNC
Sbjct: 109 QSLETICLLLAYKIKYPGNFFLLRGNHECASINRIYGFYDECKRRFNVRVWKVFTDCFNC 168
Query: 169 GVVLA 155
V A
Sbjct: 169 LPVAA 173
>At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP1
isozyme 3 (TOPP3) / phosphoprotein phosphatase 1
identical to SP|P48483 Serine/threonine protein
phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GB:AAA32838
GI:166799 from [Arabidopsis thaliana]
Length = 322
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = -3
Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
+S+ +ICL L ++ + FL + CA+ + +C+ ++S +++ +F FNC
Sbjct: 96 QSVETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKKRYSVRVWKIFTDCFNC 155
Query: 169 GVVLA 155
V A
Sbjct: 156 LPVAA 160
>At1g19650.1 68414.m02449 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
SP:P24859 from [Kluyveromyces lactissimilar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
N-terminus
Length = 608
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 354 VTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDA 512
++ V++ L + + RK EM H+K+ELL +V L A++I A
Sbjct: 526 ISSVLSRLGDLEKQIENLHSRKSEMPHEKEELLNAAVYRVDALEAELITTKKA 578
>At1g15040.2 68414.m01798 glutamine amidotransferase-related
Length = 333
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 291 QEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMH 434
QEF++ +IA + KQ+ A +++ R T L + ++ + R ++H
Sbjct: 268 QEFVKAVIAFQKKQVNATQVEMKRKTTTLVKSFSQAEFLEVRDSFVLH 315
>At5g18510.1 68418.m02185 hypothetical protein
Length = 702
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 104 ELQEWLLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIA 223
E WLLE+ + C GK+ +K++E+ +++L + +A
Sbjct: 625 EADSWLLEDREIERRCIGKFCSEVKKEEDVDERLRQRTLA 664
>At1g15040.1 68414.m01797 glutamine amidotransferase-related
Length = 395
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 291 QEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYT 392
QEF++ +IA + KQ+ A +++ R T L + ++
Sbjct: 268 QEFVKAVIAFQKKQVNATQVEMKRKTTTLVKSFS 301
>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 765
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 276 ELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKD-ELL 452
E+ K + + ++++ + + KD ++ ++NR+ + F R ++ KKD EL
Sbjct: 391 EVAKMRSQLGSEMSMQTQILSTKDAELKGAREEINRLQSEFSSYKIRAHALLQKKDMELA 450
Query: 453 QVKDTQ 470
KD++
Sbjct: 451 AAKDSE 456
>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 788
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 276 ELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKD-ELL 452
E+ K + + ++++ + + KD ++ ++NR+ + F R ++ KKD EL
Sbjct: 391 EVAKMRSQLGSEMSMQTQILSTKDAELKGAREEINRLQSEFSSYKIRAHALLQKKDMELA 450
Query: 453 QVKDTQ 470
KD++
Sbjct: 451 AAKDSE 456
>At5g43380.2 68418.m05303 serine/threonine protein phosphatase PP1
isozyme 7 (TOPP7) identical to SP|O82733
Serine/threonine protein phosphatase PP1 isozyme 7 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 327
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = -3
Query: 397 NPVYMRLRSVITRVTCKSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRN 218
N Y+ L + R +SL +ICL L ++ + FL + A+ + +C+
Sbjct: 80 NSNYLFLGDYVDRGK-QSLETICLLLAYKIKFPENFFLLRGNHESASINRIYGFYDECKR 138
Query: 217 QFSHQLFVLFLLLFNCGVVLA 155
+FS +++ +F FNC V A
Sbjct: 139 RFSVKIWRIFTDCFNCLPVAA 159
>At5g43380.1 68418.m05302 serine/threonine protein phosphatase PP1
isozyme 7 (TOPP7) identical to SP|O82733
Serine/threonine protein phosphatase PP1 isozyme 7 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 331
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = -3
Query: 397 NPVYMRLRSVITRVTCKSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRN 218
N Y+ L + R +SL +ICL L ++ + FL + A+ + +C+
Sbjct: 80 NSNYLFLGDYVDRGK-QSLETICLLLAYKIKFPENFFLLRGNHESASINRIYGFYDECKR 138
Query: 217 QFSHQLFVLFLLLFNCGVVLA 155
+FS +++ +F FNC V A
Sbjct: 139 RFSVKIWRIFTDCFNCLPVAA 159
>At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 234 STQTRCKVVAQKTEELFKKQEFIERIIAIKDKQ---IEAKDLQVTRVMTDLNRMYTGFQE 404
S + K A+ TE L K+ E +++ + K+K+ IEA+ + + + +LN +
Sbjct: 106 SVELLSKAQARATE-LEKQVEVLKKFLEQKNKEKELIEAQTSETEKKLNELNSRVEKLHK 164
Query: 405 TMQRKDEMMHKKDELLQVKDTQV 473
T + + + K + L++ + ++
Sbjct: 165 TNEEQKNKIRKLERALKISEEEM 187
>At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 234 STQTRCKVVAQKTEELFKKQEFIERIIAIKDKQ---IEAKDLQVTRVMTDLNRMYTGFQE 404
S + K A+ TE L K+ E +++ + K+K+ IEA+ + + + +LN +
Sbjct: 106 SVELLSKAQARATE-LEKQVEVLKKFLEQKNKEKELIEAQTSETEKKLNELNSRVEKLHK 164
Query: 405 TMQRKDEMMHKKDELLQVKDTQV 473
T + + + K + L++ + ++
Sbjct: 165 TNEEQKNKIRKLERALKISEEEM 187
>At5g22040.1 68418.m02566 expressed protein
Length = 284
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 288 KQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQR-KDEMMHKKDELLQ 455
+Q+F++ I + QIEA+D ++ R +N + ++E + + K++E+++
Sbjct: 128 EQKFMDDITRLAKDQIEAEDAEIARHREKINTINARYEEQLATLRARHTGKREEIMR 184
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00575: S1 RNA binding domain
Length = 1168
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +3
Query: 225 HLPSTQTRCKVVAQKTEELFKKQEFIERIIA-IKDKQIEAKDLQVTRVMTDLNRMYTGFQ 401
HL S + KV+A+ +L + E ++ +K+ E D V ++T ++ +Y
Sbjct: 25 HLGSAE---KVLAEFIIDLGRHSETVDEFDKNLKEAGAEMPDYFVRSLLTTIHGIYPPKP 81
Query: 402 ETMQRKDEMMHKKDELLQVKDTQ 470
++ ++K+E +K + L +KDT+
Sbjct: 82 KSEKKKEEGDDQKFKGLAIKDTK 104
>At3g05580.1 68416.m00619 serine/threonine protein phosphatase,
putative similar to serine/threonine protein phosphatase
PP1 isozyme 8 SP:O82734 from [Arabidopsis thaliana]
Length = 318
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = -3
Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
+SL +ICL L +R + FL + A + +C+ +F+ +L+ +F FNC
Sbjct: 101 QSLETICLLLAYKIRYPSKIFLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNC 160
Query: 169 GVVLA 155
V A
Sbjct: 161 LPVAA 165
>At2g29400.1 68415.m03573 serine/threonine protein phosphatase PP1
isozyme 1 (TOPP1) / phosphoprotein phosphatase 1
identical to SP|P30366| Serine/threonine protein
phosphatase PP1 isozyme 1 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GI:166572
[Arabidopsis thaliana]
Length = 318
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = -3
Query: 349 KSLASICLSLIAMMRSINSCFLKSSSVFCATTLQRVCVLGKCRNQFSHQLFVLFLLLFNC 170
+SL +ICL L ++ + FL + A+ + +C+ +F+ +L+ +F FNC
Sbjct: 112 QSLETICLLLAYKIKYPENFFLLRGNHESASINRIYGFYDECKRRFNVRLWKIFTDCFNC 171
Query: 169 GVVLA 155
V A
Sbjct: 172 LPVAA 176
>At1g77960.1 68414.m09085 hypothetical protein
Length = 211
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 458 NLQQLVFFVHHFIFSLHSFLK 396
N +Q +FF+H F+ + H+F K
Sbjct: 176 NAEQRLFFLHFFLLTYHTFFK 196
>At1g24560.1 68414.m03090 expressed protein
Length = 678
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +3
Query: 294 EFIERIIAIKDKQIEAKDL---QVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKD 464
E I +IA D++ +A++ + + NR+ E ++++DE ++DE L+ K+
Sbjct: 35 ERITELIAELDREKKAREAAESSKSELQVSFNRLKALAVEAIKKRDESKRERDEALKEKE 94
Query: 465 TQVSNL 482
+ L
Sbjct: 95 NLTNEL 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,083,927
Number of Sequences: 28952
Number of extensions: 327008
Number of successful extensions: 1061
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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