Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120318.Seq
         (734 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24GN8 Cluster: Cation-transporting ATPase; n=1; Tetrah...    33   7.3  
UniRef50_UPI000069DA8D Cluster: Probable phospholipid-transporti...    33   9.6  
UniRef50_O97236 Cluster: Putative uncharacterized protein MAL3P2...    33   9.6  

>UniRef50_Q24GN8 Cluster: Cation-transporting ATPase; n=1;
           Tetrahymena thermophila SB210|Rep: Cation-transporting
           ATPase - Tetrahymena thermophila SB210
          Length = 1206

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 208 RSKYPLNGIFEMYSTEIIFNKCIFFI*LVLLIVCMFQ*YYVHIW 339
           RS+Y  +GI      E+  NK I +I ++L+++C+F   Y  IW
Sbjct: 303 RSRYKFSGI------ELNLNKMIIWIFILLILICLFSASYYQIW 340


>UniRef50_UPI000069DA8D Cluster: Probable phospholipid-transporting
           ATPase VA (EC 3.6.3.1) (ATPVA) (Aminophospholipid
           translocase VA).; n=1; Xenopus tropicalis|Rep: Probable
           phospholipid-transporting ATPase VA (EC 3.6.3.1) (ATPVA)
           (Aminophospholipid translocase VA). - Xenopus tropicalis
          Length = 1061

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +1

Query: 265 NKCIFFI*LVLLIVCMFQ*YYVHIWTCCCLK*NKSFIHS 381
           NK +F+  L+LLI+C+F    V    C C+K N SFI++
Sbjct: 248 NKDVFWCVLILLIMCLFS--AVGKIFCICIKNNPSFIYA 284


>UniRef50_O97236 Cluster: Putative uncharacterized protein MAL3P2.15;
            n=3; Plasmodium|Rep: Putative uncharacterized protein
            MAL3P2.15 - Plasmodium falciparum (isolate 3D7)
          Length = 3978

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +2

Query: 401  YQIKRTFNYKINFSY*AKCRLNQIALHHSICRFVYLKKNLSKYENYRLLL*FFSHAL 571
            Y     +NY  + +Y +  R+++ ++H SI   + L   L K  NY L++ F+ + L
Sbjct: 3268 YNCSNNYNYNCSNNYYSNQRIDKDSVHMSIISIIMLLNVLRKNCNYSLMINFYINML 3324


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,247,898
Number of Sequences: 1657284
Number of extensions: 12442821
Number of successful extensions: 20774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20768
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)