Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120318.Seq
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    30   0.022
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    24   1.5  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   3.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 29.9 bits (64), Expect = 0.022
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 274 IFFI*LVLLIVCMFQ*YYVHIWTCC 348
           I F   +LL+VC++  YY+H+  CC
Sbjct: 246 ILFTVHLLLLVCIYYFYYMHLLFCC 270



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 232 IFEMYSTEIIFNKCIFFI*LVLLIVCMFQ*YYVHI 336
           I+  YS  IIF   + F  ++++++C++  YY  I
Sbjct: 212 IYYFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFI 246



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 232 IFEMYSTEIIFNKCIFFI*LVLLIVCMFQ*YYVHIWTCC 348
           I+  Y   IIF   + F+  +    C F  + +H+  CC
Sbjct: 146 IYYFYCAFIIFTVHLLFLLCIYHFFCAFIIFTMHLLFCC 184



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 244 YSTEIIFNKCIFFI*LVLLIVCMFQ*YYVHIWTCCCLK*NKSFIHSLINLIII 402
           Y T  +   C F I  V  ++C +  YY  I   C      +FI   ++L+ +
Sbjct: 78  YFTVHLLFYCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIFTVHLLFL 130



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
 Frame = +1

Query: 202 LVRSKYPLNGIFEMYSTEIIFNKCIFFI*------LVLLIVCMFQ*YYVHIWTC 345
           LV   Y L  I+  Y   I FN  + F+       + LL  C F  + VH   C
Sbjct: 46  LVFKCYNLRRIYYFYCVSITFNVHLLFLLCSGYFTVHLLFYCPFIIFTVHFLLC 99


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 517 VFFKIHKPTYRVV*GYLV*ATFRLIREIDLVIK 419
           + FKIH   +  +  Y+    + ++REID ++K
Sbjct: 1   MIFKIHFLVFGALLTYVSSVEYLILREIDTILK 33


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 242 CIQLKLFLINVSFL--FNWFC*LYVCFNDTMYTY 337
           C  LK F+I +  L        L+VCFN  MY +
Sbjct: 38  CRILKYFIIAIYVLTILTSSVTLHVCFNSYMYAF 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,714
Number of Sequences: 336
Number of extensions: 3701
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)