Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120318.Seq
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    27   3.7  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   4.8  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   8.5  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 297 QNQLNKKDTFIKNNFS*IHFKY 232
           QN+L KK+ FIKN+   + F Y
Sbjct: 32  QNELRKKELFIKNDGKALSFPY 53


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 348 LSEIK*IIHSFTH*FDNNTKLNGPLITRSISLIKRNVA 461
           L+E+K ++HS +   + N  L+ PL +R+ S +  NV+
Sbjct: 161 LTELKDVMHSMSDSHEQNNALHPPL-SRTTSFVADNVS 197


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/40 (20%), Positives = 19/40 (47%)
 Frame = -2

Query: 172 IKLTPINFFCYDIFFKFYYLNGCTVAKMSLKPNSLLTSRQ 53
           + +  +  + Y +F     L  C V    +KP+++L + +
Sbjct: 258 LSIKAVRLYAYQMFMALDLLKQCNVIHSDIKPDNMLVNEK 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,108
Number of Sequences: 5004
Number of extensions: 59931
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)