Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120318.Seq
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0875 - 28434894-28435082,28435173-28435247,28435399-284354...    30   2.2  
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183...    28   8.8  

>03_05_0875 -
           28434894-28435082,28435173-28435247,28435399-28435490,
           28435721-28435835,28436019-28436188,28436237-28436310,
           28436397-28436553,28436658-28436730,28436898-28436960,
           28437067-28437341,28437710-28437816,28437884-28438788,
           28439742-28440032
          Length = 861

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 178 TSIKLTPINFFCYDIFFKFYYLNGCTVAKMSLKPNSLLTSR 56
           T +KLT +  +   IF    +L  C V    +KP+++L ++
Sbjct: 668 TGLKLTAVRAYTKHIFIALKHLRHCGVLHCDIKPDNILVNK 708


>12_02_1280 -
           27517683-27517871,27517955-27518029,27518155-27518318,
           27518424-27518538,27518783-27519074,27519162-27519318,
           27519438-27519510,27520309-27520377,27520471-27520694,
           27520800-27520981,27521067-27522064,27522335-27522580
          Length = 927

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 172 IKLTPINFFCYDIFFKFYYLNGCTVAKMSLKPNSLLTS 59
           +KLT +  +   +F    +L  C V    +KP+++L +
Sbjct: 712 LKLTAVRAYSKQLFIALKHLKNCKVLHCDIKPDNMLVN 749


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,109,693
Number of Sequences: 37544
Number of extensions: 288509
Number of successful extensions: 337
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)