Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120312.Seq
         (771 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    38   0.21 
UniRef50_Q23RG0 Cluster: Putative uncharacterized protein; n=1; ...    34   4.5  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 38.3 bits (85), Expect = 0.21
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +1

Query: 370 NMGRPPPRCCDYLQWLAGKKWMGRAEDLAQWCGLGKA 480
           ++GRPP R  D L  +AG  WM  A+D + W  LG+A
Sbjct: 452 SVGRPPTRWTDDLVKVAGSTWMQAAQDRSLWKSLGEA 488


>UniRef50_Q23RG0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 652

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
 Frame = +3

Query: 99  LMINFLQNFLCALLPRQYTYIIPISI*FSTLI*INKKYRI--ISFFPL*--IQTPNFIII 266
           L+I+ + +F+C  +    TY+   +I F  +   N  Y I  I F+ L   I  P F++ 
Sbjct: 125 LIISMVVHFICLAISNTTTYVQESNIKFVQIFTKNILYIISFIGFWCLTSNISRPRFLVA 184

Query: 267 DYFAFILIVLILY 305
             FA I+I++I+Y
Sbjct: 185 HMFACIIILIIIY 197


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 679,391,677
Number of Sequences: 1657284
Number of extensions: 12864194
Number of successful extensions: 23141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23134
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)