Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120312.Seq
(771 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 28 0.095
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 28 0.095
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 28 0.095
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 28 0.095
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 28 0.095
AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein. 23 2.7
AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein. 23 2.7
EF125544-1|ABL73928.1| 279|Tribolium castaneum obstractor B pro... 22 4.7
DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein. 22 4.7
AM292359-1|CAL23171.2| 436|Tribolium castaneum gustatory recept... 22 4.7
AM292322-1|CAL23134.1| 373|Tribolium castaneum gustatory recept... 21 8.2
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 27.9 bits (59), Expect = 0.095
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 670 YNTYNLMVSSYIFLIYTIIVINYYHLTIHIMSYP 569
+N MV+S + L T++V+NY+H T I P
Sbjct: 278 FNCIMFMVASSVVL--TVVVLNYHHRTADIHEMP 309
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 27.9 bits (59), Expect = 0.095
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 670 YNTYNLMVSSYIFLIYTIIVINYYHLTIHIMSYP 569
+N MV+S + L T++V+NY+H T I P
Sbjct: 278 FNCIMFMVASSVVL--TVVVLNYHHRTADIHEMP 309
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 27.9 bits (59), Expect = 0.095
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 670 YNTYNLMVSSYIFLIYTIIVINYYHLTIHIMSYP 569
+N MV+S + L T++V+NY+H T I P
Sbjct: 278 FNCIMFMVASSVVL--TVVVLNYHHRTADIHEMP 309
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 27.9 bits (59), Expect = 0.095
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 670 YNTYNLMVSSYIFLIYTIIVINYYHLTIHIMSYP 569
+N MV+S + L T++V+NY+H T I P
Sbjct: 278 FNCIMFMVASSVVL--TVVVLNYHHRTADIHEMP 309
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 27.9 bits (59), Expect = 0.095
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 670 YNTYNLMVSSYIFLIYTIIVINYYHLTIHIMSYP 569
+N MV+S + L T++V+NY+H T I P
Sbjct: 278 FNCIMFMVASSVVL--TVVVLNYHHRTADIHEMP 309
>AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein.
Length = 712
Score = 23.0 bits (47), Expect = 2.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 355 CSRKCNMGRPPPRCCDY 405
C+R C G PPR C Y
Sbjct: 108 CARACREGE-PPRICYY 123
>AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein.
Length = 717
Score = 23.0 bits (47), Expect = 2.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 355 CSRKCNMGRPPPRCCDY 405
C+R C G PPR C Y
Sbjct: 108 CARACREGE-PPRICYY 123
>EF125544-1|ABL73928.1| 279|Tribolium castaneum obstractor B
protein.
Length = 279
Score = 22.2 bits (45), Expect = 4.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +1
Query: 343 IFKSCSRKCNMGRPPPRCCDY 405
+F +KC+ R P C D+
Sbjct: 214 VFDDVGKKCDWVRNVPECADW 234
>DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein.
Length = 414
Score = 22.2 bits (45), Expect = 4.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -3
Query: 487 SHGPFPIHTTEPGLQLSP 434
+H P+P H+ P L P
Sbjct: 343 AHNPYPSHSIYPSSNLMP 360
Score = 21.8 bits (44), Expect = 6.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 478 PFPIHTTEPGLQLSPSISY 422
P P H+T P L L+ +I++
Sbjct: 326 PVPGHSTSPNLPLTHNIAH 344
>AM292359-1|CAL23171.2| 436|Tribolium castaneum gustatory receptor
candidate 38 protein.
Length = 436
Score = 22.2 bits (45), Expect = 4.7
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -3
Query: 481 GPFPIHTTEPGL-QLSPSI 428
G FPI TEPG+ +++P +
Sbjct: 75 GIFPIKNTEPGMFRVAPEL 93
>AM292322-1|CAL23134.1| 373|Tribolium castaneum gustatory receptor
candidate 1 protein.
Length = 373
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -2
Query: 125 EVLQKVDH*INKV--RSTFF*ILNYNFKKSY 39
EV++K H + V +S F ++N+N ++SY
Sbjct: 4 EVVKKFLHSVRIVFVQSEIFCLVNFNHRESY 34
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,220
Number of Sequences: 336
Number of extensions: 3709
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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