Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120312.Seq
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0194 - 16215032-16215177,16215322-16215393,16215518-162155...    28   7.2  
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845...    28   9.5  

>02_03_0194 -
           16215032-16215177,16215322-16215393,16215518-16215593,
           16215984-16216074,16216188-16216258,16216344-16216506,
           16218841-16219065,16219206-16219507,16219551-16219680,
           16219783-16220045
          Length = 512

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 328 YLN*IIFKSCSRKCNMGRPPPRCCDYLQWLAG 423
           ++N +    C RK N+G PP  C D++  L G
Sbjct: 115 WVNCVSCDGCPRKSNLGIPPLSCPDWMFDLGG 146


>11_06_0506 - 24380469-24380632,24381737-24383893,24384488-24384541,
            24384543-24384597,24384914-24384916,24385192-24385231,
            24385576-24385632,24388124-24388412,24389764-24389771,
            24390633-24390688,24391207-24391488,24391651-24391811,
            24391887-24392121,24392860-24392943,24393022-24393117,
            24393333-24394055,24396523-24396987
          Length = 1642

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 681  SPSNYTETLELISQGWQHLRCRC 749
            SP++ T TLE+I Q W  + C C
Sbjct: 1550 SPADGTGTLEMICQVWAQMLCCC 1572


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,575,420
Number of Sequences: 37544
Number of extensions: 326873
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)