Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120312.Seq
         (771 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    28   0.37 
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    28   0.37 
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       23   7.9  

>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 670 YNTYNLMVSSYIFLIYTIIVINYYHLTIHIMSYP 569
           +N    MV+S + L  T++V+NY+H T  I   P
Sbjct: 298 FNCIMFMVASSVVL--TVVVLNYHHRTADIHEMP 329


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 670 YNTYNLMVSSYIFLIYTIIVINYYHLTIHIMSYP 569
           +N    MV+S + L  T++V+NY+H T  I   P
Sbjct: 298 FNCIMFMVASSVVL--TVVVLNYHHRTADIHEMP 329


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 355 CSRKCNMGRPPPRC 396
           C R C +GR P  C
Sbjct: 289 CKRACTLGRKPETC 302


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,967
Number of Sequences: 2352
Number of extensions: 14655
Number of successful extensions: 230
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80249979
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)