Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120307.Seq
         (816 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   2.9  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   6.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   6.7  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   6.7  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   6.7  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 268 NCRHEKFVFNSLGKEITIFDEVTYI 342
           NC H KFV ++L KE+    ++ Y+
Sbjct: 174 NC-HLKFVTDTLKKELEKLQKIVYL 197


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 623 YLCQFTYMNNVIVQHSNTMTLFKH*TCNKGI 531
           YL  F      +V H  T  L ++ TC +GI
Sbjct: 66  YLNHFDNSVTPMVNHDFTQHLSQYDTCQQGI 96


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 659 RIAFFFSFC 633
           R+ FFFSFC
Sbjct: 8   RVLFFFSFC 16


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 623 YLCQFTYMNNVIVQHSNTMTLFKH*TCNKGI 531
           YL  F      +V H  T  L ++ TC +GI
Sbjct: 66  YLNHFDNSVTPMVNHDFTQHLSQYDTCQQGI 96


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 623 YLCQFTYMNNVIVQHSNTMTLFKH*TCNKGI 531
           YL  F      +V H  T  L ++ TC +GI
Sbjct: 66  YLNHFDNSVTPMVNHDFTQHLSQYDTCQQGI 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,750
Number of Sequences: 336
Number of extensions: 4465
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)