Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120307.Seq
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    31   0.20 
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   9.7  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 314 LLFLMRLLIFQVIFMNFFNHKQIQCRAHFRHKLKEQQ 424
           LLF + ++I  VIF+NFF     +C  +F H L+ Q+
Sbjct: 24  LLFAL-VIILSVIFINFFFFYLCRCCVYFYHTLENQE 59


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 47  KDNLKPWFAELNVDMDKIQE-IVRAIINLYEMWKS 148
           K+ L+P   ++N + DK++E + ++I    E W S
Sbjct: 69  KNKLQPIHKQINYETDKLKERLGKSIDKFQEQWNS 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,774
Number of Sequences: 5004
Number of extensions: 67500
Number of successful extensions: 158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)