Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120307.Seq
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003...    29   5.8  
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271...    29   5.8  
09_01_0154 + 2298432-2299415                                           29   5.8  
02_05_0049 - 25423260-25423344,25423415-25423483,25424143-254242...    28   7.7  

>12_02_0362 +
           17998110-17998345,17998877-17998958,18000309-18000392,
           18000600-18000734,18001395-18001570,18001654-18001805,
           18003730-18004575,18004961-18005301
          Length = 683

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 5   IAIGALQIAC----VMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYE 136
           IA GA+ +A     V L  D  K W+ E +V   +++E+   ++ LYE
Sbjct: 252 IAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYE 299


>11_01_0357 +
           2715271-2715509,2716200-2716281,2717117-2717251,
           2717428-2717457,2717486-2717661,2717743-2717894,
           2718395-2719083
          Length = 500

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 5   IAIGALQIAC----VMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYE 136
           IA GA+ +A     V L  D  K W+ E +V   +++E+   ++ LYE
Sbjct: 235 IAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYE 282


>09_01_0154 + 2298432-2299415
          Length = 327

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 248 INPYYKICLAISGELALVWASWTIALVFLFF 156
           I P Y I  A+S EL   +  W + +VF FF
Sbjct: 253 ICPVYTIAAALSDELLFTFYVWLLGVVFGFF 283


>02_05_0049 -
           25423260-25423344,25423415-25423483,25424143-25424231,
           25424315-25424407,25424516-25424594,25425557-25425657,
           25425864-25425944,25426369-25426740
          Length = 322

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -3

Query: 124 NDSSHNFLDFIHVNI*LSKPRFEI 53
           ND +H+FL  +HV++ L++P+ ++
Sbjct: 191 NDVTHHFLHCVHVHLELTRPKSQV 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,844,616
Number of Sequences: 37544
Number of extensions: 350120
Number of successful extensions: 837
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)