Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120307.Seq
         (816 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)              88   7e-18

>SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)
          Length = 282

 Score = 88.2 bits (209), Expect = 7e-18
 Identities = 39/69 (56%), Positives = 55/69 (79%)
 Frame = +2

Query: 5   IAIGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKEIQGLLS 184
           IA+ A+ +ACV+  KD+ K WFAEL+VDMD+I EI   I+ LYE+WK+++EK+EI+G+L+
Sbjct: 198 IALAAIHMACVIQQKDS-KQWFAELSVDMDQIVEITHHILRLYEIWKNFEEKQEIRGILN 256

Query: 185 KMPKPKPAP 211
           K PKPK  P
Sbjct: 257 KAPKPKVRP 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,868,081
Number of Sequences: 59808
Number of extensions: 439180
Number of successful extensions: 863
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)