Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120307.Seq
         (816 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       25   2.8  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    24   6.4  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          23   8.5  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    23   8.5  

>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 815 FIYINIYLKDPPHFQCSNC*CW-QML*NVN-IATRLMNEVSM 696
           ++Y + Y KD PHF   +   + Q++ N N + T  +N +SM
Sbjct: 761 YVYYDFYGKDNPHFHVPSLYGFQQVVNNTNRLYTPQLNHISM 802


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 707 HSLTVLQCSHFTTFANINNLNIENEVDPLNRY 802
           H+   L  SH  T  + N+L+ ++   P+N Y
Sbjct: 348 HTTAGLNSSHIYTTPSSNSLSTQHSHSPVNGY 379


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 53  NLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKE 166
           N  PWF    V  D + ++   I+ LY+  K   E  E
Sbjct: 258 NNPPWFVIFRVSEDDMLDVCYRIMALYKRGKPNAELLE 295


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 258 ISLYKSILQNMSCYLWGAGFGLG-ILDNSPCI 166
           +++YK +L+N    +W A  G+G +L +  CI
Sbjct: 632 LAIYKQVLRNDPKNIWAAN-GIGAVLAHKGCI 662


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 812,846
Number of Sequences: 2352
Number of extensions: 16345
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)