Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120307.Seq
         (816 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40739-1|AAC50825.1|  303|Homo sapiens cyclin C protein.               94   6e-19
BC056153-1|AAH56153.1|  283|Homo sapiens cyclin C protein.             94   6e-19
BC041123-1|AAH41123.1|  283|Homo sapiens cyclin C protein.             94   6e-19
BC010135-1|AAH10135.1|  283|Homo sapiens cyclin C protein.             94   6e-19
AL137784-4|CAC14563.1|  283|Homo sapiens cyclin C protein.             94   6e-19
AB125137-1|BAD00144.1|  283|Homo sapiens cyclin C protein.             94   6e-19

>U40739-1|AAC50825.1|  303|Homo sapiens cyclin C protein.
          Length = 303

 Score = 93.9 bits (223), Expect = 6e-19
 Identities = 41/69 (59%), Positives = 54/69 (78%)
 Frame = +2

Query: 5   IAIGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKEIQGLLS 184
           IA+  L +ACV+  KD  + WFAEL+VDM+KI EI+R I+ LYE WK++DE+KE+  +LS
Sbjct: 217 IALACLHVACVVQQKD-ARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILS 275

Query: 185 KMPKPKPAP 211
           KMPKPKP P
Sbjct: 276 KMPKPKPPP 284


>BC056153-1|AAH56153.1|  283|Homo sapiens cyclin C protein.
          Length = 283

 Score = 93.9 bits (223), Expect = 6e-19
 Identities = 41/69 (59%), Positives = 54/69 (78%)
 Frame = +2

Query: 5   IAIGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKEIQGLLS 184
           IA+  L +ACV+  KD  + WFAEL+VDM+KI EI+R I+ LYE WK++DE+KE+  +LS
Sbjct: 197 IALACLHVACVVQQKD-ARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILS 255

Query: 185 KMPKPKPAP 211
           KMPKPKP P
Sbjct: 256 KMPKPKPPP 264


>BC041123-1|AAH41123.1|  283|Homo sapiens cyclin C protein.
          Length = 283

 Score = 93.9 bits (223), Expect = 6e-19
 Identities = 41/69 (59%), Positives = 54/69 (78%)
 Frame = +2

Query: 5   IAIGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKEIQGLLS 184
           IA+  L +ACV+  KD  + WFAEL+VDM+KI EI+R I+ LYE WK++DE+KE+  +LS
Sbjct: 197 IALACLHVACVVQQKD-ARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILS 255

Query: 185 KMPKPKPAP 211
           KMPKPKP P
Sbjct: 256 KMPKPKPPP 264


>BC010135-1|AAH10135.1|  283|Homo sapiens cyclin C protein.
          Length = 283

 Score = 93.9 bits (223), Expect = 6e-19
 Identities = 41/69 (59%), Positives = 54/69 (78%)
 Frame = +2

Query: 5   IAIGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKEIQGLLS 184
           IA+  L +ACV+  KD  + WFAEL+VDM+KI EI+R I+ LYE WK++DE+KE+  +LS
Sbjct: 197 IALACLHVACVVQQKD-ARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILS 255

Query: 185 KMPKPKPAP 211
           KMPKPKP P
Sbjct: 256 KMPKPKPPP 264


>AL137784-4|CAC14563.1|  283|Homo sapiens cyclin C protein.
          Length = 283

 Score = 93.9 bits (223), Expect = 6e-19
 Identities = 41/69 (59%), Positives = 54/69 (78%)
 Frame = +2

Query: 5   IAIGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKEIQGLLS 184
           IA+  L +ACV+  KD  + WFAEL+VDM+KI EI+R I+ LYE WK++DE+KE+  +LS
Sbjct: 197 IALACLHVACVVQQKD-ARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILS 255

Query: 185 KMPKPKPAP 211
           KMPKPKP P
Sbjct: 256 KMPKPKPPP 264


>AB125137-1|BAD00144.1|  283|Homo sapiens cyclin C protein.
          Length = 283

 Score = 93.9 bits (223), Expect = 6e-19
 Identities = 41/69 (59%), Positives = 54/69 (78%)
 Frame = +2

Query: 5   IAIGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKEIQGLLS 184
           IA+  L +ACV+  KD  + WFAEL+VDM+KI EI+R I+ LYE WK++DE+KE+  +LS
Sbjct: 197 IALACLHVACVVQQKD-ARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILS 255

Query: 185 KMPKPKPAP 211
           KMPKPKP P
Sbjct: 256 KMPKPKPPP 264


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,239,454
Number of Sequences: 237096
Number of extensions: 2118869
Number of successful extensions: 10045
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10039
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)