Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120307.Seq
         (816 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X62948-1|CAA44720.1|  267|Drosophila melanogaster Cyclin C protein.   118   1e-26
AY061425-1|AAL28973.1|  267|Drosophila melanogaster LD35705p pro...   118   1e-26
AE014297-1914|AAF55109.1|  267|Drosophila melanogaster CG7281-PA...   118   1e-26

>X62948-1|CAA44720.1|  267|Drosophila melanogaster Cyclin C protein.
          Length = 267

 Score =  118 bits (284), Expect = 1e-26
 Identities = 54/72 (75%), Positives = 61/72 (84%)
 Frame = +2

Query: 2   QIAIGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKEIQGLL 181
           QIAI  LQIACV+L KD  K WFAELNVD+DK+QEIVRAI+NLYE+WK + EK EIQ LL
Sbjct: 196 QIAIACLQIACVILQKDATKQWFAELNVDLDKVQEIVRAIVNLYELWKDWKEKDEIQMLL 255

Query: 182 SKMPKPKPAPQR 217
           SK+PKPKP PQR
Sbjct: 256 SKIPKPKPPPQR 267


>AY061425-1|AAL28973.1|  267|Drosophila melanogaster LD35705p
           protein.
          Length = 267

 Score =  118 bits (284), Expect = 1e-26
 Identities = 54/72 (75%), Positives = 61/72 (84%)
 Frame = +2

Query: 2   QIAIGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKEIQGLL 181
           QIAI  LQIACV+L KD  K WFAELNVD+DK+QEIVRAI+NLYE+WK + EK EIQ LL
Sbjct: 196 QIAIACLQIACVILQKDATKQWFAELNVDLDKVQEIVRAIVNLYELWKDWKEKDEIQMLL 255

Query: 182 SKMPKPKPAPQR 217
           SK+PKPKP PQR
Sbjct: 256 SKIPKPKPPPQR 267


>AE014297-1914|AAF55109.1|  267|Drosophila melanogaster CG7281-PA
           protein.
          Length = 267

 Score =  118 bits (284), Expect = 1e-26
 Identities = 54/72 (75%), Positives = 61/72 (84%)
 Frame = +2

Query: 2   QIAIGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKEIQGLL 181
           QIAI  LQIACV+L KD  K WFAELNVD+DK+QEIVRAI+NLYE+WK + EK EIQ LL
Sbjct: 196 QIAIACLQIACVILQKDATKQWFAELNVDLDKVQEIVRAIVNLYELWKDWKEKDEIQMLL 255

Query: 182 SKMPKPKPAPQR 217
           SK+PKPKP PQR
Sbjct: 256 SKIPKPKPPPQR 267


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,156,785
Number of Sequences: 53049
Number of extensions: 644357
Number of successful extensions: 1632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)