Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120307.Seq
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125448-7|AAD12812.2|  302|Caenorhabditis elegans Cyclin c prot...    67   1e-11
AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical ...    30   2.3  
AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical ...    29   4.0  
AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical ...    29   4.0  
U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U40941-3|AAM51502.1|  730|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical ...    28   9.2  

>AF125448-7|AAD12812.2|  302|Caenorhabditis elegans Cyclin c protein
           1 protein.
          Length = 302

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 26/74 (35%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
 Frame = +2

Query: 5   IAIGALQIACVMLGK-DNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKEIQGLL 181
           I + ++ +A  ++G+ + L+ W  E++ D +K+ + V  I  +Y +WKS+DEK+E++ L+
Sbjct: 219 IGLSSIMVAMELMGRGEELEAWLVEVDTDFEKVTDCVEQIYKMYTLWKSFDEKEEVKKLM 278

Query: 182 SKMPKP--KPAPQR 217
           +K+PKP  +P PQ+
Sbjct: 279 AKLPKPNQQPPPQQ 292


>AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical
           protein H10E21.2 protein.
          Length = 382

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 263 IIYHYINPYYKICLAISGELALVWASWTIALVFLF 159
           +  H I   Y I + + G +  VW SW + +VF+F
Sbjct: 8   VAQHVITTSY-ITVILFGNIGNVWVSWKVGIVFVF 41


>AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical
           protein F40G9.14 protein.
          Length = 261

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 785 PPHFQCSNC*CWQML*NVNIATRLMNEVSMLKNMQTDKTKFIRIAFFFSFCHHTYLCQ 612
           PPH QC+N  C +         R   E  ++  ++TD+   I     FS C + Y+C+
Sbjct: 9   PPHHQCNNNLCKRW-------PRHFQESPVVAPLRTDEGPIIMDGCGFSGCQYPYVCR 59


>AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical
           protein B0524.3 protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 11  IGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKS 148
           IG +Q+       + L   F ++ +DM+K+ +++ A+    E W S
Sbjct: 248 IGKIQVDLTFTKHEGLHRHFIDVLLDMEKLADMIDALQKAMEFWDS 293


>U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical
           protein F35C8.7a protein.
          Length = 771

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 414 FNLCLKCALHCICLWLKKFIKIT*NISNLIKNSNFFS*GIKNEFFMST--IINYISLYK 244
           F +CLKC   C+ ++  KF+     I   I   NFFS   K+ F + T  I+  + ++K
Sbjct: 604 FLMCLKCCFWCLEVFF-KFLTKNAYIMIAIYGKNFFS-SAKDSFLLITRNIVRTVVVHK 660


>U40941-3|AAM51502.1|  730|Caenorhabditis elegans Hypothetical
           protein F35C8.7b protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 414 FNLCLKCALHCICLWLKKFIKIT*NISNLIKNSNFFS*GIKNEFFMST--IINYISLYK 244
           F +CLKC   C+ ++  KF+     I   I   NFFS   K+ F + T  I+  + ++K
Sbjct: 563 FLMCLKCCFWCLEVFF-KFLTKNAYIMIAIYGKNFFS-SAKDSFLLITRNIVRTVVVHK 619


>AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical
           protein K07E8.5 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 746 ML*NVNIATRLMNEVSMLKNMQTDKTKFIRIAFFFSFCHHTYL 618
           +L N+ +   ++ + S  +N + D    I + FFF FC+ T L
Sbjct: 176 ILLNICVVFTVVTKGSSNENGEDDTISLILVVFFFIFCNFTAL 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,816,334
Number of Sequences: 27780
Number of extensions: 368593
Number of successful extensions: 979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)